Os06g0292400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0292400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.18 | 0.379 | 10.1 | 0.23 | 0.373 | 0.75 | 0.114 | 1.45 | 0.228 | 2.95 | 50.17 | 3323 | -- | -- |
| 66.23 | 0.379 | 10.1 | 0.144 | 0.377 | 0.655 | 0.0878 | -- | 0.181 | 2.73 | 45.34 | 2865 | -- | -- |
| 64.64 | 0.374 | 10.1 | 0.29 | 0.354 | 0.982 | -- | 1.99 | 0.231 | 3.04 | 51.76 | 4229 | -- | -- |
| 66.16 | 0.379 | 10.1 | 0.155 | 0.365 | 0.623 | -- | -- | 0.176 | 3.08 | 44.84 | 2865 | -- | -- |
| 71.44 | 0.394 | 10.1 | 0.3 | -- | 1.06 | -- | 2.29 | 0.265 | -- | 51.6 | 4190 | -- | -- |
| 72.95 | 0.4 | 10.1 | 0.145 | 0.382 | -- | 0.191 | -- | 0.21 | 2.65 | -- | -- | -- | -- |
| 73.07 | 0.4 | 10.1 | 0.14 | 0.384 | -- | -- | -- | 0.209 | 2.78 | -- | -- | -- | -- |
| 73.12 | 0.398 | 10.1 | 0.162 | -- | 0.698 | -- | -- | 0.157 | -- | 43.78 | 2796 | -- | -- |
| 66.71 | 0.38 | 10.1 | -- | 0.358 | 0.613 | -- | -- | 0.16 | 3.05 | 44.8 | 2841 | -- | -- |
| 81.64 | 0.422 | 10.1 | 0.156 | -- | -- | -- | -- | 0.219 | -- | -- | -- | -- | -- |
| 73.58 | 0.401 | 10.1 | -- | 0.387 | -- | -- | -- | 0.194 | 2.78 | -- | -- | -- | -- |
| 73.5 | 0.399 | 10.1 | -- | -- | 0.634 | -- | -- | 0.134 | -- | 40 | 2757 | -- | -- |
| 82.28 | 0.423 | 10.1 | -- | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.14 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 2 | 63.17 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 7 | 63.23 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 19 | 63.29 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 31 | 63.34 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 42 | 63.38 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 71 | 63.47 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 99 | 63.53 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 18 | NA |
| 104 | 63.54 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 164 | 63.69 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 18 | NA |
| 238 | 63.90 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 239 | 63.90 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 301 | 64.11 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 312 | 64.15 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 327 | 64.18 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 13 |
| 328 | 64.18 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 329 | 64.18 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 3 | 18 |
| 342 | 64.21 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 3 | 10 |
| 345 | 64.22 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 365 | 64.25 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 2 | NA |
| 366 | 64.25 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 7 |
| 371 | 64.26 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 408 | 64.31 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 414 | 64.32 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 4 |
| 429 | 64.34 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 430 | 64.34 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 18 |
| 433 | 64.34 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 445 | 64.36 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 448 | 64.36 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 456 | 64.37 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 472 | 64.39 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 495 | 64.41 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 16 |
| 517 | 64.43 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 18 |
| 544 | 64.45 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 565 | 64.46 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 18 |
| 575 | 64.47 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 578 | 64.48 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 583 | 64.48 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 587 | 64.48 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 590 | 64.48 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 591 | 64.48 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 16 |
| 638 | 64.50 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 640 | 64.51 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 652 | 64.51 | humidity | 90.0 | 43200 | > th | dose dependent | no | NA | NA |
| 656 | 64.51 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 16 | 21 |
| 677 | 64.52 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 685 | 64.53 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 686 | 64.53 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 15 | 18 |
| 703 | 64.53 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 706 | 64.54 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 743 | 64.55 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 745 | 64.56 | humidity | 90.0 | 43200 | > th | dose independent | sin | 19 | NA |
| 747 | 64.56 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 759 | 64.56 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 762 | 64.57 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 795 | 64.58 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 18 | NA |
| 822 | 64.60 | humidity | 90.0 | 43200 | < th | dose independent | sin | 19 | NA |
| 865 | 64.62 | humidity | 90.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 883 | 64.62 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 884 | 64.62 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 894 | 64.63 | atmosphere | 1005.0 | 43200 | > th | dose independent | no | NA | NA |
| 895 | 64.63 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 896 | 64.63 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 905 | 64.63 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 951 | 64.64 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 964 | 64.65 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 965 | 64.65 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 985 | 64.65 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |