Os06g0286700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR disease resistance protein homologue.
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Os06g0286700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR disease resistance protein homologue.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 262.06 | 0.761 | 6.14 | 0.799 | 2.06 | -2.31 | 0.688 | 1.78 | 1.64 | 18.7 | 19.5 | 1462 | 20.3 | 1.24 |
| 275.9 | 0.774 | 6.14 | 0.701 | 2.09 | -2.2 | 0.632 | -- | 1.62 | 18.6 | 19.72 | 1461 | 20.3 | 1.22 |
| 263.25 | 0.756 | 6.14 | 0.78 | 2.06 | -2.32 | -- | 1.78 | 1.65 | 18.7 | 19.51 | 1462 | 20.3 | 1.24 |
| 270.73 | 0.766 | 6.18 | 0.317 | 2.01 | -2.22 | -- | -- | 1.64 | 18.7 | 19.23 | 1461 | 20.2 | 1.25 |
| 410.92 | 0.944 | 6.08 | 0.951 | -- | -2.97 | -- | 2.08 | 1.62 | -- | 18.53 | 2410 | 20.8 | 1.57 |
| 467.92 | 1.01 | 6.37 | -0.631 | 2.16 | -- | 0.7 | -- | 0.72 | 18.3 | -- | -- | -- | -- |
| 469.13 | 1.01 | 6.37 | -0.639 | 2.16 | -- | -- | -- | 0.723 | 18.3 | -- | -- | -- | -- |
| 310.95 | 0.821 | 6.03 | 0.291 | -- | -4.17 | -- | -- | 1.69 | -- | 10.5 | 1978 | 23.2 | 5.95 |
| 271.33 | 0.767 | 6.17 | -- | 2.03 | -2.21 | -- | -- | 1.62 | 18.6 | 19.26 | 1460 | 20.3 | 1.14 |
| 711.79 | 1.25 | 6.33 | -0.697 | -- | -- | -- | -- | 0.676 | -- | -- | -- | -- | -- |
| 479.89 | 1.02 | 6.36 | -- | 2.17 | -- | -- | -- | 0.794 | 18.3 | -- | -- | -- | -- |
| 304.27 | 0.812 | 6.14 | -- | -- | -4.04 | -- | -- | 1.45 | -- | 10.38 | 1966 | 23.1 | 6.9 |
| 724.59 | 1.26 | 6.31 | -- | -- | -- | -- | -- | 0.753 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 266.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 10 | 271.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 16 |
| 42 | 274.18 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 114 | 278.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 9 |
| 154 | 278.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 163 | 278.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 164 | 278.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 176 | 279.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 275 | 280.30 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 396 | 281.71 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 425 | 282.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 450 | 282.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 551 | 283.18 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 561 | 283.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 856 | 286.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 875 | 286.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 5 |
| 938 | 287.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 3 |