Os06g0252800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to STF-1 (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os06g0252800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to STF-1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 223.8 | 0.703 | 2.99 | -0.0798 | 0.173 | 2.17 | 0.147 | -21.5 | 0.0355 | 5.36 | 0.5001 | 133 | 2.07 | 1.07 |
| 237.65 | 0.718 | 3.02 | 0.0459 | 0.0943 | 2.97 | -0.209 | -- | 0.004 | 5.49 | 0.6444 | 61 | 2.03 | 1.12 |
| 223.67 | 0.697 | 2.99 | -0.0696 | 0.18 | 2.17 | -- | -21.5 | 0.037 | 5.44 | 0.483 | 127 | 2.02 | 1.09 |
| 234.45 | 0.713 | 3.04 | 0.0737 | 0.114 | 3.91 | -- | -- | 0.0171 | 6.37 | 0.6749 | 61 | 2.02 | 1.1 |
| 225.27 | 0.699 | 2.99 | -0.0651 | -- | 2.26 | -- | -21.5 | 0.0388 | -- | 0.4739 | 126 | 2.02 | 1.08 |
| 266.54 | 0.765 | 3 | 4.64e-05 | 0.256 | -- | -0.172 | -- | 0.0435 | 5.01 | -- | -- | -- | -- |
| 266.62 | 0.765 | 3 | 0.000294 | 0.254 | -- | -- | -- | 0.0443 | 4.95 | -- | -- | -- | -- |
| 232.98 | 0.711 | 3.02 | 0.0481 | -- | 4.63 | -- | -- | -0.0383 | -- | 0.7244 | 69 | 2.03 | 1.11 |
| 231.93 | 0.709 | 3.01 | -- | 0.135 | 4.81 | -- | -- | -0.0277 | 6.7 | 0.7077 | 69 | 2.02 | 1.12 |
| 270.02 | 0.768 | 3 | 0.00959 | -- | -- | -- | -- | 0.0508 | -- | -- | -- | -- | -- |
| 266.62 | 0.764 | 3 | -- | 0.254 | -- | -- | -- | 0.0443 | 4.95 | -- | -- | -- | -- |
| 232.85 | 0.711 | 3.02 | -- | -- | 4.9 | -- | -- | -0.0259 | -- | 0.7216 | 69 | 2.03 | 1.11 |
| 270.02 | 0.767 | 3 | -- | -- | -- | -- | -- | 0.0498 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 234.09 | wind | 1.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 2 | 240.99 | wind | 1.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 5 | 247.87 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 8 | 247.88 | wind | 7.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 28 | 255.03 | wind | 7.0 | 90 | > th | dose dependent | rect. | 23 | 3 |
| 29 | 255.05 | wind | 7.0 | 90 | > th | dose independent | rect. | 23 | 3 |
| 32 | 255.10 | wind | 5.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 36 | 255.10 | wind | 5.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 40 | 255.12 | wind | 3.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 50 | 255.17 | wind | 7.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 66 | 255.22 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 1 |
| 68 | 255.22 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 78 | 255.59 | wind | 3.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 80 | 255.61 | wind | 3.0 | 10 | > th | dose dependent | rect. | 1 | 6 |
| 101 | 255.88 | wind | 1.0 | 270 | < th | dose dependent | rect. | 9 | 19 |
| 104 | 255.92 | wind | 1.0 | 90 | < th | dose dependent | rect. | 14 | 14 |
| 130 | 256.28 | wind | 3.0 | 10 | > th | dose dependent | rect. | 1 | 3 |
| 203 | 257.18 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 223 | 257.61 | wind | 1.0 | 270 | < th | dose independent | rect. | 16 | 11 |
| 229 | 257.65 | wind | 1.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 233 | 257.73 | wind | 3.0 | 10 | > th | dose independent | rect. | 1 | 5 |
| 236 | 257.74 | wind | 1.0 | 270 | < th | dose independent | rect. | 9 | 18 |
| 252 | 257.85 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 278 | 258.09 | wind | 1.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 309 | 258.41 | wind | 5.0 | 10 | > th | dose independent | rect. | 7 | 2 |
| 315 | 258.42 | wind | 5.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 323 | 258.44 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 7 | 1 |
| 329 | 258.44 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 366 | 258.68 | wind | 1.0 | 270 | < th | dose dependent | sin | 15 | NA |
| 424 | 259.05 | radiation | 10.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 451 | 259.05 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 488 | 259.14 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 24 | 3 |
| 493 | 259.17 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 1 | 1 |
| 515 | 259.31 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 1 | 10 |
| 519 | 259.33 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 24 | 1 |
| 530 | 259.37 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 5 |
| 531 | 259.37 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 532 | 259.37 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 24 | 10 |
| 542 | 259.43 | wind | 3.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 581 | 259.60 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 1 |
| 584 | 259.60 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 615 | 259.70 | wind | 7.0 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 637 | 259.76 | wind | 1.0 | 90 | < th | dose independent | rect. | 2 | 9 |
| 646 | 259.79 | wind | 7.0 | 720 | > th | dose independent | rect. | 20 | 13 |
| 671 | 259.90 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 24 | 3 |
| 687 | 259.94 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 708 | 259.98 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 714 | 260.00 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 1 | 13 |
| 722 | 260.01 | wind | 7.0 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 777 | 260.14 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 783 | 260.17 | temperature | 20.0 | 10 | > th | dose independent | rect. | 2 | 2 |
| 787 | 260.18 | wind | 1.0 | 90 | < th | dose independent | rect. | 2 | 21 |
| 797 | 260.22 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 830 | 260.34 | wind | 5.0 | 90 | > th | dose dependent | sin | 11 | NA |
| 838 | 260.35 | wind | 1.0 | 90 | < th | dose dependent | rect. | 2 | 21 |
| 842 | 260.36 | wind | 7.0 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 849 | 260.37 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 852 | 260.37 | wind | 1.0 | 90 | > th | dose independent | rect. | 7 | 23 |
| 853 | 260.38 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 24 | 7 |
| 859 | 260.38 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 6 | 22 |
| 880 | 260.42 | wind | 1.0 | 90 | < th | dose dependent | rect. | 2 | 15 |
| 881 | 260.43 | wind | 7.0 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 912 | 260.47 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 2 | 2 |
| 917 | 260.47 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 921 | 260.48 | wind | 1.0 | 90 | < th | dose independent | rect. | 2 | 15 |
| 932 | 260.50 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 1 | 5 |
| 940 | 260.52 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 24 | 5 |