Os06g0239200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0239200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.67 | 0.427 | 13.3 | 0.518 | 1.46 | 1.35 | -0.0129 | 2.71 | -0.35 | 20.3 | 1 | 4424 | -- | -- |
| 98.37 | 0.462 | 13.3 | 0.498 | 1.51 | 1.34 | -0.318 | -- | -0.369 | 20.4 | 1.611 | 4486 | -- | -- |
| 82.19 | 0.422 | 13.3 | 0.524 | 1.44 | 1.36 | -- | 2.74 | -0.346 | 20.6 | 1.01 | 4475 | -- | -- |
| 91.16 | 0.445 | 13.3 | 0.123 | 1.46 | 1.12 | -- | -- | -0.432 | 20.6 | 1.53 | 4520 | -- | -- |
| 120.39 | 0.511 | 13.3 | 0.199 | -- | 1.81 | -- | 1.5 | -0.406 | -- | 2.001 | 5264 | -- | -- |
| 109.8 | 0.491 | 13.3 | 0.247 | 1.38 | -- | -0.279 | -- | -0.225 | 19.9 | -- | -- | -- | -- |
| 110.03 | 0.491 | 13.3 | 0.255 | 1.38 | -- | -- | -- | -0.226 | 19.9 | -- | -- | -- | -- |
| 111.72 | 0.492 | 13.3 | 0.612 | -- | 2.03 | -- | -- | -0.473 | -- | 0.3004 | 983 | -- | -- |
| 90.33 | 0.443 | 13.3 | -- | 1.47 | 1.19 | -- | -- | -0.425 | 20.6 | 1.04 | 4503 | -- | -- |
| 213.43 | 0.683 | 13.2 | 0.239 | -- | -- | -- | -- | -0.244 | -- | -- | -- | -- | -- |
| 111.74 | 0.494 | 13.3 | -- | 1.38 | -- | -- | -- | -0.254 | 19.9 | -- | -- | -- | -- |
| 98.81 | 0.463 | 13.3 | -- | -- | 2.16 | -- | -- | -0.362 | -- | 0.4556 | 994 | -- | -- |
| 214.94 | 0.684 | 13.2 | -- | -- | -- | -- | -- | -0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.12 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 22 |
| 6 | 77.44 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 14 | 78.87 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 16 | 79.17 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 15 | 20 |
| 18 | 79.22 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 72 | 81.30 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 77 | 81.40 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 86 | 81.47 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 156 | 81.94 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 160 | 81.95 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 21 | 9 |
| 163 | 82.01 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 183 | 82.08 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 223 | 82.30 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 281 | 82.59 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 305 | 82.68 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 312 | 82.72 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 338 | 82.77 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 1 | 5 |
| 341 | 82.78 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 416 | 82.98 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 448 | 83.05 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 3 | NA |
| 460 | 83.08 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 560 | 83.28 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 5 | 16 |
| 590 | 83.33 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 612 | 83.35 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 627 | 83.37 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 697 | 83.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 698 | 83.46 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 769 | 83.54 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 827 | 83.61 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 8 |
| 835 | 83.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 838 | 83.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 850 | 83.63 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 8 |
| 919 | 83.69 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 990 | 83.75 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 6 |