BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0239200 Os06g0239200|Os06g0239200
         (93 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19020.1  | chr1:6568142-6568402 FORWARD LENGTH=87              47   2e-06
AT3G48180.1  | chr3:17790571-17790804 REVERSE LENGTH=78            45   9e-06

>AT1G19020.1 | chr1:6568142-6568402 FORWARD LENGTH=87
          Length = 86

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 11/79 (13%)

Query: 7  GTSWADQWDYXXXXXXXXXXXXXXXXXXXXXXXXXX-----------MEKTKAAAASGLR 55
          GTSWADQWD                                      ++KTKA A+SG +
Sbjct: 3  GTSWADQWDNSGDSAKGGRIGSGAVVRSSGSGATSNTTKYKEKMGQGLDKTKAVASSGFK 62

Query: 56 KVKEGTAHGFQWIKDKYQQ 74
          K+K G+A GF+W+KDKY +
Sbjct: 63 KLKTGSAIGFRWVKDKYHK 81



>AT3G48180.1 | chr3:17790571-17790804 REVERSE LENGTH=78
          Length = 77

 Score = 44.7 bits (104), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 26/32 (81%)

Query: 43 MEKTKAAAASGLRKVKEGTAHGFQWIKDKYQQ 74
          + KTKAAA+SGL+KVK GT+ G  W+KDKY +
Sbjct: 41 LGKTKAAASSGLKKVKIGTSLGLNWVKDKYNK 72



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.306    0.121    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,565,029
Number of extensions: 35292
Number of successful extensions: 93
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 93
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 29
Effective length of database: 9,351,945
Effective search space: 271206405
Effective search space used: 271206405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 104 (44.7 bits)