Os06g0237900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA glycosylase family protein.
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Os06g0237900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA glycosylase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 258.55 | 0.755 | 4.76 | -1.46 | 0.47 | 1.97 | -0.101 | -0.951 | -0.191 | 0.0604 | 22.04 | 1512 | -- | -- |
| 259.24 | 0.75 | 4.74 | -1.18 | 0.484 | 1.95 | -0.0984 | -- | -0.132 | 0.303 | 21.76 | 1544 | -- | -- |
| 258.44 | 0.749 | 4.77 | -1.47 | 0.495 | 2.02 | -- | -1.03 | -0.196 | 0.537 | 22.12 | 1579 | -- | -- |
| 259.24 | 0.75 | 4.73 | -1.16 | 0.485 | 1.93 | -- | -- | -0.114 | 0.252 | 21.85 | 1544 | -- | -- |
| 263.38 | 0.756 | 4.75 | -1.39 | -- | 2.12 | -- | -0.87 | -0.184 | -- | 21.84 | 1117 | -- | -- |
| 391.87 | 0.928 | 4.63 | -0.458 | 0.552 | -- | 0.0181 | -- | 0.336 | 0.361 | -- | -- | -- | -- |
| 391.88 | 0.927 | 4.63 | -0.458 | 0.552 | -- | -- | -- | 0.336 | 0.355 | -- | -- | -- | -- |
| 262.78 | 0.755 | 4.72 | -1.26 | -- | 2.38 | -- | -- | -0.139 | -- | 19.27 | 1095 | -- | -- |
| 291.2 | 0.795 | 4.69 | -- | 0.463 | 1.61 | -- | -- | 0.0835 | 23.9 | 22.3 | 1504 | -- | -- |
| 411.05 | 0.947 | 4.62 | -0.44 | -- | -- | -- | -- | 0.345 | -- | -- | -- | -- | -- |
| 397.41 | 0.933 | 4.62 | -- | 0.546 | -- | -- | -- | 0.387 | 0.311 | -- | -- | -- | -- |
| 294.69 | 0.8 | 4.68 | -- | -- | 1.88 | -- | -- | 0.0754 | -- | 21.9 | 1086 | -- | -- |
| 416.15 | 0.952 | 4.61 | -- | -- | -- | -- | -- | 0.394 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 256.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 4 |
| 6 | 256.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 28 | 257.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 31 | 257.43 | temperature | 20 | 1440 | > th | dose dependent | sin | 20 | NA |
| 272 | 259.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 358 | 260.37 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 362 | 260.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 380 | 260.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 400 | 260.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 800 | 262.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 888 | 263.41 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 902 | 263.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 913 | 263.56 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 945 | 263.75 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 985 | 264.02 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |