BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0237900 Os06g0237900|J075060C07
         (221 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47830.1  | chr3:17647069-17648346 FORWARD LENGTH=294          163   7e-41

>AT3G47830.1 | chr3:17647069-17648346 FORWARD LENGTH=294
          Length = 293

 Score =  163 bits (412), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 120/180 (66%), Gaps = 10/180 (5%)

Query: 26  QCLAVRDALLAFHGFPDEFAPFXXXXXXL-----GLDTSPDPEEDTDGDPSPPPTVLDGL 80
           +C  VRDALL+ HGFP EFA +              DT  + + +T  + +   +VLDGL
Sbjct: 42  ECRDVRDALLSLHGFPPEFANYRRQRLRSFSAVDDHDTQCNLKSETLNE-TEEESVLDGL 100

Query: 81  VTTLLSQNTTDAISRRAFAALKAAFPTWDQVVDEEEGKRLEDAIRCGGLAATKAARIRAM 140
           V  LLSQNTT++ S+RAFA+LKA FP WD V++ E  K +E+AIRCGGLA  KA  I+ +
Sbjct: 101 VKILLSQNTTESNSQRAFASLKATFPKWDDVLNAE-SKSIENAIRCGGLAPKKAVCIKNI 159

Query: 141 LRGVRERRGKICLEYLRDLSVDEVKTELSRFKGIGPKTVSSISLFSCFFSEFGFRPVGFH 200
           L  ++  RG++CLEYLR LSV+EVKTELS FKG+GPKTVS + +F+   ++F   PV  H
Sbjct: 160 LNRLQNERGRLCLEYLRGLSVEEVKTELSHFKGVGPKTVSCVLMFNLQHNDF---PVDTH 216



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,390,777
Number of extensions: 176515
Number of successful extensions: 595
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 126
Effective length of database: 8,502,049
Effective search space: 1071258174
Effective search space used: 1071258174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)