Os06g0229000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to FtsH protease (VAR2) (Zinc dependent protease).
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Os06g0229000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to FtsH protease (VAR2) (Zinc dependent protease).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 842.05 | 1.36 | 6.39 | 1.73 | 3.59 | -3.41 | -1.53 | -2.22 | 1.12 | 11.3 | 19.75 | 230 | 14.5 | 13.1 |
| 866.97 | 1.37 | 6.39 | 1.93 | 3.66 | -3.29 | -1.23 | -- | 1.11 | 11.2 | 19.32 | 206 | 14.7 | 13.3 |
| 845.71 | 1.35 | 6.38 | 1.74 | 3.65 | -3.36 | -- | -1.2 | 1.11 | 11.3 | 19.7 | 225 | 14.6 | 13 |
| 852.76 | 1.36 | 6.39 | 1.81 | 3.69 | -3.34 | -- | -- | 1.11 | 11.3 | 19.71 | 225 | 14.6 | 12.9 |
| 979.51 | 1.46 | 6.56 | 1.15 | -- | -5.86 | -- | -1.5 | 0.648 | -- | 5.694 | 214 | 15.1 | 12.6 |
| 1079.8 | 1.54 | 6.33 | 1.08 | 7.08 | -- | 1.69 | -- | 0.903 | 11 | -- | -- | -- | -- |
| 1091.91 | 1.55 | 6.33 | 1.15 | 7.07 | -- | -- | -- | 0.909 | 11 | -- | -- | -- | -- |
| 979.25 | 1.46 | 6.5 | 1.32 | -- | -5.97 | -- | -- | 0.776 | -- | 5.365 | 230 | 14.8 | 12.7 |
| 937.81 | 1.43 | 6.38 | -- | 4.33 | -2.68 | -- | -- | 0.895 | 11.3 | 19.9 | 195 | 14.7 | 13 |
| 4202 | 3.03 | 6.5 | 0.993 | -- | -- | -- | -- | 0.856 | -- | -- | -- | -- | -- |
| 1126.77 | 1.57 | 6.35 | -- | 7.06 | -- | -- | -- | 0.78 | 11 | -- | -- | -- | -- |
| 1014.84 | 1.48 | 6.54 | -- | -- | -6.03 | -- | -- | 0.679 | -- | 7.128 | 246 | 14.6 | 12.8 |
| 4228 | 3.04 | 6.53 | -- | -- | -- | -- | -- | 0.746 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 861.44 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 13 |
| 2 | 872.58 | temperature | 20 | 90 | > th | dose independent | rect. | 16 | 13 |
| 3 | 874.80 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 13 |
| 5 | 879.81 | temperature | 15 | 90 | > th | dose dependent | rect. | 16 | 13 |
| 39 | 902.77 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 41 | 902.80 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 3 | 13 |
| 43 | 902.96 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 2 | 13 |
| 46 | 903.41 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 1 | 14 |
| 51 | 903.80 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 58 | 904.30 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 21 | 19 |
| 66 | 904.55 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 83 | 905.26 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 19 | 20 |
| 89 | 905.45 | radiation | 1 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 94 | 905.56 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 21 | 19 |
| 107 | 905.99 | atmosphere | 995 | 14400 | > th | dose independent | sin | 5 | NA |
| 133 | 906.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 7 |
| 143 | 907.13 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 2 | NA |
| 170 | 907.68 | atmosphere | 1000 | 14400 | < th | dose dependent | sin | 8 | NA |
| 179 | 907.85 | atmosphere | 995 | 14400 | < th | dose independent | sin | 5 | NA |
| 207 | 908.47 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 210 | 908.60 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 282 | 909.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 6 |
| 286 | 909.68 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 299 | 909.83 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 3 | 21 |
| 306 | 909.89 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 14 | 12 |
| 431 | 910.89 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 18 | NA |
| 480 | 911.10 | atmosphere | 1000 | 14400 | < th | dose dependent | no | NA | NA |
| 503 | 911.21 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 557 | 911.71 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 748 | 913.27 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 888 | 914.11 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 892 | 914.16 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 21 |
| 893 | 914.17 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 19 |
| 909 | 914.25 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 910 | 914.26 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 917 | 914.30 | atmosphere | 995 | 14400 | > th | dose independent | no | NA | NA |
| 939 | 914.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 945 | 914.51 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 978 | 914.67 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 996 | 914.76 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 17 | 11 |