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Os06g0226000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transposase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0219) R2 : 0.786
β1 : -1.45 (0.0842) R2dD : 0.164 R2D : 0.0635
β2 : 2.04 (0.0561) R2dC : 0.66 R2C : 0.501
β3 : 1.86 (0.103) R2dE : 0.199 R2E : -0.0501
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0967 (0.0491) R2dN8 : 0.00281 R2N8 : 0.0171
σ : 0.403
deviance : 74.82
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C
peak time of C : 8.26
E
wheather : temperature
threshold : 8.172
memory length : 996
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74 0.404 11.7 -1.57 2.18 1.95 0.417 -0.598 0.0687 8.15 7.265 852 -- --
74.14 0.401 11.7 -1.46 2.06 1.88 0.481 -- 0.099 8.26 7.843 971 -- --
74.3 0.401 11.7 -1.6 2.05 1.87 -- -0.785 0.0562 8.25 6.195 987 -- --
74.82 0.403 11.7 -1.45 2.04 1.86 -- -- 0.0967 8.26 8.172 996 -- --
260.87 0.752 11.7 -1.41 -- 1.49 -- 0.424 0.152 -- -14.39 2888 -- --
125.18 0.525 11.6 -0.931 1.83 -- 0.326 -- 0.406 7.8 -- -- -- --
125.48 0.525 11.6 -0.923 1.83 -- -- -- 0.406 7.79 -- -- -- --
261.15 0.753 11.7 -1.46 -- 1.45 -- -- 0.127 -- 13.59 2864 -- --
123.04 0.517 11.6 -- 2.05 1.28 -- -- 0.344 8.07 6.091 842 -- --
306.25 0.818 11.6 -0.901 -- -- -- -- 0.431 -- -- -- -- --
147.93 0.569 11.6 -- 1.82 -- -- -- 0.508 7.82 -- -- -- --
302.76 0.81 11.7 -- -- 1.12 -- -- 0.364 -- 13.48 1406 -- --
327.66 0.845 11.6 -- -- -- -- -- 0.531 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.78 temperature 10 720 > th dose dependent rect. 9 22
17 74.07 temperature 10 720 > th dose dependent rect. 1 23
18 74.12 temperature 10 720 > th dose dependent rect. 23 23
19 74.16 temperature 10 720 > th dose dependent rect. 1 21
24 74.32 temperature 10 720 > th dose dependent rect. 16 23
31 74.64 temperature 10 1440 > th dose dependent rect. 11 3
40 74.80 temperature 10 720 > th dose dependent no NA NA
43 74.90 temperature 10 1440 > th dose dependent rect. 10 7
49 74.91 temperature 10 1440 > th dose dependent rect. 10 14
92 75.08 temperature 10 1440 > th dose dependent sin 21 NA
123 75.19 temperature 10 720 > th dose dependent rect. 14 23
175 75.40 temperature 10 1440 > th dose dependent rect. 4 14
201 75.47 temperature 15 720 > th dose dependent rect. 12 23
541 76.16 temperature 30 720 < th dose dependent rect. 5 22
655 76.55 temperature 30 720 < th dose dependent rect. 2 23
681 76.62 temperature 30 720 < th dose dependent rect. 10 23
701 76.68 temperature 30 720 < th dose dependent rect. 7 23
722 76.75 temperature 30 720 < th dose dependent no NA NA
767 76.87 temperature 30 720 < th dose dependent rect. 15 23
806 76.97 temperature 30 1440 < th dose dependent rect. 9 15
880 77.15 temperature 30 1440 < th dose dependent sin 19 NA
915 77.22 temperature 30 720 < th dose dependent rect. 21 23
941 77.30 temperature 30 720 < th dose dependent rect. 18 23
947 77.32 temperature 30 1440 < th dose dependent rect. 13 11