BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0226000 Os06g0226000|AK121923
(225 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G41980.1 | chr5:16793765-16794889 FORWARD LENGTH=375 165 2e-41
AT5G35695.1 | chr5:13869120-13869941 FORWARD LENGTH=212 140 6e-34
AT1G43722.1 | chr1:16496403-16497377 FORWARD LENGTH=325 102 1e-22
AT3G55350.1 | chr3:20518518-20520690 FORWARD LENGTH=407 94 6e-20
AT5G28950.1 | chr5:10992505-10993435 FORWARD LENGTH=149 88 3e-18
AT3G63270.1 | chr3:23375932-23377398 REVERSE LENGTH=397 64 5e-11
AT5G28730.1 | chr5:10779003-10780218 FORWARD LENGTH=297 62 3e-10
AT4G10890.1 | chr4:6688833-6692937 FORWARD LENGTH=528 55 2e-08
AT5G12010.1 | chr5:3877975-3879483 REVERSE LENGTH=503 55 3e-08
>AT5G41980.1 | chr5:16793765-16794889 FORWARD LENGTH=375
Length = 374
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 104/172 (60%), Gaps = 8/172 (4%)
Query: 2 CIGALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDSYVL 61
C+G +D HIP V + Q FR +QNVLAA FDLRF YVLAGWEGSA D VL
Sbjct: 143 CVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVL 202
Query: 62 QDALSRTNGLKIPEGKYFLADAGYAARPGVLPPYRGTRYHLKEYKGAREPENPKELFNLR 121
AL+R N L++P+GKY++ D Y PG + PY G + + E KE+FN R
Sbjct: 203 NAALTRRNKLQVPQGKYYIVDNKYPNLPGFIAPYHGVSTNSR--------EEAKEMFNER 254
Query: 122 HSSLRTTIERAFGALKNRFRIFKCQPFFPLKTQVKIVMACCALHNWIIEDGP 173
H L I R FGALK RF I P +PL+TQVK+V+A CALHN++ + P
Sbjct: 255 HKLLHRAIHRTFGALKERFPILLSAPPYPLQTQVKLVIAACALHNYVRLEKP 306
>AT5G35695.1 | chr5:13869120-13869941 FORWARD LENGTH=212
Length = 211
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 83/126 (65%), Gaps = 11/126 (8%)
Query: 44 FLYVLAGWEGSAHDSYVLQDALSRTNGLKIPEGKYFLADAGYAARPGVLPPYRGTRYHLK 103
F+YVL+GWEGSAHDS VL DAL K++L D G+A R L P+RG RYHL+
Sbjct: 25 FIYVLSGWEGSAHDSRVLSDALR----------KFYLVDCGFANRLNFLAPFRGVRYHLQ 74
Query: 104 EYKGAR-EPENPKELFNLRHSSLRTTIERAFGALKNRFRIFKCQPFFPLKTQVKIVMACC 162
E+ G R +PE P ELFNLRH SLR IER FG K+RF IFK P F K Q +V+ C
Sbjct: 75 EFAGQRRDPETPHELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQAGLVLTCA 134
Query: 163 ALHNWI 168
ALHN++
Sbjct: 135 ALHNFL 140
>AT1G43722.1 | chr1:16496403-16497377 FORWARD LENGTH=325
Length = 324
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 6/146 (4%)
Query: 1 GCIGALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDSYV 60
G +GA+DGTH+ V +Q + R S N++A D + F Y+ G GS +D+ V
Sbjct: 175 GFVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAV 234
Query: 61 LQDALSRTNGLKIPEG-KYFLADAGYAARPGVLPPYRGT-----RYHLKEYKGAREPENP 114
LQ A + +P KY+L D+GY + G+L PYR + RYH+ ++ P N
Sbjct: 235 LQIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRNRVVRYHMSQFYYGPRPRNK 294
Query: 115 KELFNLRHSSLRTTIERAFGALKNRF 140
ELFN H+SLR+ IER F KN+
Sbjct: 295 HELFNQCHTSLRSVIERTFRIWKNKM 320
>AT3G55350.1 | chr3:20518518-20520690 FORWARD LENGTH=407
Length = 406
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 93/189 (49%), Gaps = 32/189 (16%)
Query: 1 GCIGALDGTHI----PACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAH 56
C GA+D THI PA P + + G K F S + A VD D+RFL V+AGW GS +
Sbjct: 182 NCCGAIDITHIVMNLPAVEPSN-KVWLDGEKNF-SMTLQAVVDPDMRFLDVIAGWPGSLN 239
Query: 57 DSYVLQDA--------LSRTNGLKIPEG------KYFLADAGYAARPGVLPPYRGTRYHL 102
D VL+++ R NG K+P +Y + D+G+ P +L PY+G L
Sbjct: 240 DDVVLKNSGFYKLVEKGKRLNGEKLPLSERTELREYIVGDSGFPLLPWLLTPYQGKPTSL 299
Query: 103 KEYKGAREPENPKELFNLRHSSLRTTIERAFGALKNRFRIFKCQPFFPLKTQV-KIVMAC 161
P+ FN RHS + A LK+R+RI + P + ++ +I+ C
Sbjct: 300 -----------PQTEFNKRHSEATKAAQMALSKLKDRWRIINGVMWMPDRNRLPRIIFVC 348
Query: 162 CALHNWIIE 170
C LHN II+
Sbjct: 349 CLLHNIIID 357
>AT5G28950.1 | chr5:10992505-10993435 FORWARD LENGTH=149
Length = 148
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 2 CIGALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDSYVL 61
C+GA+D THI A V FR RK SQN+LAA +FD+ F+YVL+GWEGSAHDS VL
Sbjct: 25 CVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKVL 84
Query: 62 QDALSR-TNGLKIP 74
DAL+R +N L +P
Sbjct: 85 NDALTRNSNRLPVP 98
>AT3G63270.1 | chr3:23375932-23377398 REVERSE LENGTH=397
Length = 396
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 31/189 (16%)
Query: 2 CIGALDGTHIPACVP-MHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDSYV 60
C GA+D THI +P + D + ++K S + D ++RFL ++ GW G S +
Sbjct: 179 CCGAIDTTHIIMTLPAVQASDDWCDQEKNYSMFLQGVFDHEMRFLNMVTGWPGGMTVSKL 238
Query: 61 LQ----------------DALSRTNGLKIPEGKYFLADAGYAARPGVLPPYRGTRYHLKE 104
L+ + + + G +I E Y + Y P ++ P+
Sbjct: 239 LKFSGFFKLCENAQILDGNPKTLSQGAQIRE--YVVGGISYPLLPWLITPH--------- 287
Query: 105 YKGAREPENPKELFNLRHSSLRTTIERAFGALKNRFRIFKCQPFFPLKTQV-KIVMACCA 163
+ P + FN RH +R+ AF LK +RI + P + ++ I++ CC
Sbjct: 288 --DSDHPSDSMVAFNERHEKVRSVAATAFQQLKGSWRILSKVMWRPDRRKLPSIILVCCL 345
Query: 164 LHNWIIEDG 172
LHN II+ G
Sbjct: 346 LHNIIIDCG 354
>AT5G28730.1 | chr5:10779003-10780218 FORWARD LENGTH=297
Length = 296
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 31 SQNVLAAVDFDLRFLYVLAGWEGSAHDSYVLQDALSRTNGLKI-PEGKYFLADAGYAARP 89
S NVLA D D+ F Y G GS HD+ VL A+S + P+ KY+L D+GYA +
Sbjct: 139 SFNVLAICDLDMLFTYCFVGMAGSTHDARVLSAAISDDPLFHVPPDSKYYLVDSGYANKR 198
Query: 90 GVLPPYR 96
G L PYR
Sbjct: 199 GYLAPYR 205
>AT4G10890.1 | chr4:6688833-6692937 FORWARD LENGTH=528
Length = 527
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 12/153 (7%)
Query: 3 IGALDGTHIPACVPMHMQDRFRGR-------KKFQSQNVLA-AVDFDLRFLYVLAG---W 51
+ L+ ++ V M +++ + R + QS NV+ +D L L A
Sbjct: 8 LQELENVYLEESVAMFLEEVDKNRTVRDIVARYQQSLNVVKRKIDDVLSALLKFAADTLK 67
Query: 52 EGSAHDSYVLQDALSRTNGLKIPEG-KYFLADAGYAARPGVLPPYRGTRYHLKEYKGARE 110
+HD+ VL+ + P KY+L ++ Y G L P+R YHL ++
Sbjct: 68 SQESHDTKVLKYCARNESFSPHPSNRKYYLVNSVYPTTTGYLGPHRRILYHLGQFGRGGP 127
Query: 111 PENPKELFNLRHSSLRTTIERAFGALKNRFRIF 143
P +ELFN +H LR+ I+R FG K ++RI
Sbjct: 128 PVTVQELFNRKHLDLRSVIDRTFGVWKAKWRIL 160
>AT5G12010.1 | chr5:3877975-3879483 REVERSE LENGTH=503
Length = 502
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 3 IGALDGTHIPACVP-MHMQDRF------RGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSA 55
+G++ THIP P + + F R +K S + A V+ F + GW GS
Sbjct: 286 VGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITIQAVVNPKGVFTDLCIGWPGSM 345
Query: 56 HDSYVLQDAL--SRTNGLKIPEGKYFLADAGYAARPGVLPPYRGTRYHLKEYKGAREPEN 113
D VL+ +L R N + +G + G+ VL PY T+ +L + A
Sbjct: 346 PDDKVLEKSLLYQRANNGGLLKGMWVAGGPGHPLLDWVLVPY--TQQNLTWTQHA----- 398
Query: 114 PKELFNLRHSSLRTTIERAFGALKNRFRIFKCQPFFPLKTQVKIVMACCALHN 166
FN + S ++ + AFG LK R+ + + L+ ++ ACC LHN
Sbjct: 399 ----FNEKMSEVQGVAKEAFGRLKGRWACLQKRTEVKLQDLPTVLGACCVLHN 447
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,759,227
Number of extensions: 178233
Number of successful extensions: 392
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 9
Length of query: 225
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 130
Effective length of database: 8,502,049
Effective search space: 1105266370
Effective search space used: 1105266370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)