Os06g0225400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0225400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.34 | 0.356 | 9.32 | 0.369 | 0.65 | -1.28 | -0.869 | -0.285 | 0.425 | 22.2 | 22.4 | 2237 | -- | -- |
| 57.65 | 0.354 | 9.33 | 0.333 | 0.657 | -1.27 | -0.83 | -- | 0.415 | 22.1 | 22.42 | 2231 | -- | -- |
| 60.1 | 0.361 | 9.33 | 0.373 | 0.649 | -1.3 | -- | -0.18 | 0.416 | 21.9 | 22.4 | 2225 | -- | -- |
| 60.13 | 0.361 | 9.33 | 0.301 | 0.666 | -1.29 | -- | -- | 0.412 | 21.9 | 22.39 | 2221 | -- | -- |
| 85.74 | 0.431 | 9.32 | 0.334 | -- | -1.36 | -- | -0.134 | 0.37 | -- | 22.57 | 2289 | -- | -- |
| 118.68 | 0.511 | 9.23 | 0.777 | 0.764 | -- | -0.81 | -- | 0.87 | 22.4 | -- | -- | -- | -- |
| 121.25 | 0.516 | 9.23 | 0.811 | 0.772 | -- | -- | -- | 0.873 | 22.2 | -- | -- | -- | -- |
| 85.71 | 0.431 | 9.33 | 0.28 | -- | -1.36 | -- | -- | 0.353 | -- | 22.61 | 2295 | -- | -- |
| 61.87 | 0.366 | 9.34 | -- | 0.663 | -1.4 | -- | -- | 0.363 | 21.8 | 22.18 | 2373 | -- | -- |
| 157.42 | 0.586 | 9.21 | 0.822 | -- | -- | -- | -- | 0.875 | -- | -- | -- | -- | -- |
| 138.57 | 0.551 | 9.25 | -- | 0.776 | -- | -- | -- | 0.783 | 22.2 | -- | -- | -- | -- |
| 87.34 | 0.435 | 9.33 | -- | -- | -1.47 | -- | -- | 0.327 | -- | 22.3 | 2307 | -- | -- |
| 175.22 | 0.618 | 9.23 | -- | -- | -- | -- | -- | 0.783 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 2 | 56.23 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 34 | 58.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 42 | 59.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 19 |
| 51 | 59.31 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 89 | 60.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 149 | 61.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 171 | 61.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 21 |
| 176 | 61.66 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 199 | 61.81 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 297 | 62.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 337 | 62.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 4 |
| 343 | 62.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 389 | 62.76 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 439 | 62.94 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 483 | 63.06 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 529 | 63.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 565 | 63.24 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 698 | 63.51 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 872 | 63.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 23 |