BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0225400 Os06g0225400|AK109268
         (245 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09995.2  | chr5:3125185-3126302 REVERSE LENGTH=258             93   1e-19
AT1G08530.1  | chr1:2701252-2702952 FORWARD LENGTH=258             65   4e-11

>AT5G09995.2 | chr5:3125185-3126302 REVERSE LENGTH=258
          Length = 257

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 1/147 (0%)

Query: 98  CFVFLSAMRSMLECKKAAESLEKSFGSAREKLPETMASVKLVGREICDLAVDLSNLSQEL 157
            ++F +A+ ++L  KKAAESLEK     RE+LP+TMA+V+L G EI DL ++LS+L Q +
Sbjct: 111 SWLFFAAIPTLLAFKKAAESLEKLLDVTREELPDTMAAVRLSGMEISDLTMELSDLGQGI 170

Query: 158 RKGVQSSMSVVHAADAQLHQLTTSAPQGN-QRVTSNRKRAAGEPLLASTVRELRELIAEL 216
            +GV+SS   +  A+ +L +LT   P  + Q V    K    EP+LA   R  RE + + 
Sbjct: 171 TQGVKSSTRAIRVAEDRLRRLTNMNPVASMQEVMRQTKTDETEPMLAKQARSFREGVVKG 230

Query: 217 HSGFGVAVSIAGLLTWASNFVSKRPKN 243
            S + +  +I       +++++KR K 
Sbjct: 231 RSLWQLFSTITRFSKITTSYLAKRAKQ 257



>AT1G08530.1 | chr1:2701252-2702952 FORWARD LENGTH=258
          Length = 257

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 56/85 (65%)

Query: 100 VFLSAMRSMLECKKAAESLEKSFGSAREKLPETMASVKLVGREICDLAVDLSNLSQELRK 159
           + ++A+ +++   +AA S  K   +AR++LP T+A+V+L G EI DL ++LS+LSQ++  
Sbjct: 122 LVITAIPTLVAMGRAATSFAKLADTARKELPSTLAAVRLSGMEISDLTLELSDLSQDITD 181

Query: 160 GVQSSMSVVHAADAQLHQLTTSAPQ 184
           G+  S   V AA+A + Q+ T A Q
Sbjct: 182 GINKSAKAVQAAEAGIKQIGTLAQQ 206



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.127    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,065,705
Number of extensions: 88875
Number of successful extensions: 342
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 2
Length of query: 245
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 149
Effective length of database: 8,474,633
Effective search space: 1262720317
Effective search space used: 1262720317
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)