FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0223300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to TDR8 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0434) R2 : 0.0686
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.59 (0.791) R2dE : 0.0687 R2E : 0.0685
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0212 (0.0914) R2dN8 : 0.000141 R2N8 : -6.15e-05
σ : 0.816
deviance : 306.65
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.074
memory length : 60
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13.2
open length of G : 1.36

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
289.43 0.799 2.98 0.468 0.162 5.86 0.278 11.7 0.093 9.18 1.532 1118 13 1
306.8 0.822 2.88 -0.0248 0.0854 4.59 0.55 -- 0.016 9.53 0.91 91 13 1.48
289.55 0.793 2.98 0.47 0.161 5.91 -- 11.7 0.0922 9.15 1.53 1117 13 1
306.02 0.815 2.88 0.0136 0.114 4.66 -- -- 0.0203 6.83 1.117 74 13.1 1.41
291.08 0.795 2.98 0.478 -- 5.83 -- 11.6 0.0944 -- 1.53 1117 13 0.994
327.67 0.849 2.88 -0.0844 0.102 -- 0.503 -- -0.00374 9 -- -- -- --
328.53 0.849 2.88 -0.0676 0.103 -- -- -- -0.00381 8.43 -- -- -- --
306.64 0.816 2.88 0.0189 -- 4.59 -- -- 0.0232 -- 1.069 72 13.2 1.43
305.98 0.815 2.88 -- 0.114 4.63 -- -- 0.0191 6.8 1.04 73 13.2 1.36
329.12 0.848 2.89 -0.0671 -- -- -- -- -0.00278 -- -- -- -- --
328.65 0.848 2.88 -- 0.102 -- -- -- 0.00373 8.48 -- -- -- --
306.65 0.816 2.88 -- -- 4.59 -- -- 0.0212 -- 1.074 60 13.2 1.36
329.24 0.847 2.89 -- -- -- -- -- 0.00467 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 300.56 radiation 1.0 1440 < th dose independent rect. 13 1
2 300.56 radiation 1.0 1440 < th dose dependent rect. 13 1
3 301.00 radiation 1.0 1440 > th dose independent rect. 13 1
4 301.35 radiation 1.0 1440 < th dose independent rect. 10 1
5 301.35 radiation 1.0 1440 < th dose dependent rect. 10 1
6 301.41 radiation 1.0 1440 < th dose independent rect. 9 5
7 301.41 radiation 1.0 1440 < th dose dependent rect. 9 5
10 301.64 radiation 1.0 1440 > th dose independent rect. 9 5
11 301.68 radiation 1.0 1440 > th dose independent rect. 9 3
31 302.71 humidity 90.0 720 > th dose independent rect. 11 2
37 302.84 humidity 90.0 720 > th dose dependent rect. 11 2
69 304.51 radiation 1.0 1440 > th dose independent rect. 9 1
74 305.03 radiation 1.0 10 < th dose independent rect. 13 1
84 305.03 radiation 1.0 10 < th dose dependent rect. 13 1
123 306.21 humidity 80.0 1440 < th dose independent rect. 11 2
159 307.32 humidity 70.0 90 > th dose dependent rect. 12 1
167 307.51 humidity 80.0 90 > th dose independent rect. 12 1
174 307.62 temperature 20.0 90 < th dose independent rect. 7 14
189 308.34 humidity 80.0 1440 < th dose independent rect. 3 11
190 308.37 humidity 80.0 1440 < th dose independent rect. 9 5
191 308.40 humidity 80.0 1440 < th dose independent rect. 24 14
195 308.49 radiation 1.0 1440 < th dose dependent rect. 15 1
196 308.50 humidity 80.0 1440 < th dose independent rect. 7 7
214 309.03 wind 7.0 720 > th dose independent rect. 20 13
216 309.20 humidity 80.0 1440 > th dose independent rect. 9 5
264 310.31 humidity 70.0 720 > th dose dependent rect. 12 1
266 310.36 temperature 20.0 90 < th dose dependent rect. 7 14
267 310.39 wind 7.0 720 > th dose dependent rect. 20 13
274 310.54 temperature 25.0 1440 < th dose independent rect. 13 1
283 310.75 temperature 25.0 1440 < th dose independent rect. 11 3
299 311.07 humidity 80.0 1440 > th dose independent rect. 3 11
311 311.21 temperature 20.0 90 < th dose independent rect. 14 7
340 311.28 temperature 20.0 90 < th dose independent rect. 11 10
354 311.41 humidity 80.0 1440 < th dose independent sin 4 NA
362 311.47 humidity 80.0 1440 > th dose independent rect. 24 14
363 311.48 temperature 25.0 10 < th dose independent rect. 13 1
370 311.48 radiation 1.0 1440 < th dose independent rect. 11 17
374 311.51 radiation 1.0 1440 < th dose independent rect. 11 12
378 311.52 radiation 1.0 1440 < th dose independent rect. 11 14
388 311.64 wind 7.0 720 > th dose independent rect. 20 2
401 311.67 temperature 25.0 1440 > th dose independent rect. 13 1
421 311.77 precipitation 0.1 720 > th dose independent rect. 20 3
422 311.77 precipitation 0.1 720 > th dose dependent rect. 20 3
487 312.20 wind 7.0 720 > th dose dependent rect. 20 2
493 312.23 temperature 25.0 1440 > th dose independent rect. 11 3
500 312.28 temperature 25.0 1440 < th dose dependent rect. 11 3
515 312.35 temperature 25.0 1440 < th dose dependent rect. 13 1
528 312.44 wind 7.0 720 > th dose dependent rect. 19 8
535 312.45 wind 7.0 720 > th dose dependent rect. 19 6
552 312.48 wind 3.0 720 < th dose independent rect. 23 1
566 312.62 radiation 1.0 1440 < th dose dependent rect. 11 17
572 312.65 radiation 1.0 1440 < th dose dependent rect. 11 12
596 312.79 humidity 80.0 720 > th dose independent rect. 22 17
608 312.84 temperature 25.0 1440 < th dose dependent rect. 11 6
629 312.94 humidity 80.0 10 > th dose independent rect. 14 1
676 313.08 wind 7.0 720 > th dose independent rect. 20 5
703 313.17 wind 5.0 720 < th dose independent rect. 22 8
730 313.27 radiation 1.0 1440 < th dose independent sin 19 NA
755 313.36 temperature 20.0 90 < th dose dependent rect. 14 7
759 313.37 temperature 20.0 90 < th dose dependent rect. 12 9
763 313.39 radiation 1.0 1440 > th dose independent sin 19 NA
786 313.46 temperature 20.0 10 < th dose dependent rect. 7 14
890 313.86 humidity 80.0 1440 > th dose independent sin 3 NA
914 313.96 temperature 20.0 90 < th dose independent sin 22 NA
947 314.11 humidity 90.0 1440 < th dose dependent rect. 11 2
951 314.13 radiation 1.0 1440 < th dose dependent sin 20 NA
964 314.16 wind 7.0 720 > th dose independent rect. 24 9
978 314.26 wind 7.0 10 > th dose dependent rect. 19 10
992 314.31 wind 5.0 720 < th dose independent rect. 19 15
997 314.33 temperature 20.0 90 > th dose independent sin 22 NA