FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0222900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Type I inositol-1,4,5-trisphosphate 5-phosphatase 2 (EC 3.1.3.56) (At5PTase2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0196) R2 : 0.013
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.101 (0.0412) R2dN8 : 0.0168 R2N8 : 0.013
σ : 0.369
deviance : 62.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.37 0.365 2.89 0.0697 0.0607 1.19 -0.0422 2.39 0.12 5.46 18.37 1678 -- --
61.64 0.366 2.87 0.121 0.049 0.291 -0.0607 -- 0.133 5.06 20 1526 -- --
60.17 0.361 2.9 0.072 0.0445 1.74 -- 3.5 0.108 5.52 17.2 1481 -- --
61.63 0.366 2.87 0.133 0.0551 0.24 -- -- 0.139 5.51 21.56 1726 -- --
60.32 0.362 2.91 0.0812 -- 1.86 -- 3.76 0.108 -- 17.19 1500 -- --
62.12 0.37 2.88 0.0648 0.0556 -- -0.0663 -- 0.107 5.64 -- -- -- --
62.14 0.369 2.88 0.0644 0.0552 -- -- -- 0.107 5.5 -- -- -- --
61.79 0.366 2.87 0.134 -- 0.236 -- -- 0.142 -- 21.8 1751 -- --
62 0.367 2.87 -- 0.0582 0.14 -- -- 0.118 5.42 22.9 1630 -- --
62.29 0.369 2.88 0.0662 -- -- -- -- 0.109 -- -- -- -- --
62.24 0.369 2.88 -- 0.0563 -- -- -- 0.1 5.45 -- -- -- --
62.14 0.367 2.88 -- -- 0.116 -- -- 0.123 -- 29.7 1852 -- --
62.41 0.369 2.88 -- -- -- -- -- 0.101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.69 atmosphere 1015.0 30 < th dose independent rect. 23 23
3 58.88 wind 9.0 1440 < th dose independent rect. 23 1
4 58.88 temperature 10.0 1440 > th dose independent rect. 23 1
7 58.88 temperature 30.0 1440 < th dose independent rect. 23 1
11 58.88 humidity 50.0 1440 > th dose independent rect. 23 1
21 58.88 atmosphere 995.0 1440 > th dose independent rect. 23 1
22 58.88 radiation 1.0 1440 < th dose independent rect. 23 1
42 58.88 temperature 10.0 1440 > th dose independent rect. 24 23
45 58.88 radiation 1.0 1440 < th dose dependent rect. 23 1
50 58.89 humidity 90.0 30 < th dose independent rect. 22 1
52 58.90 temperature 20.0 30 > th dose dependent rect. 22 1
55 58.91 temperature 25.0 30 > th dose independent rect. 22 1
59 58.92 atmosphere 1005.0 30 > th dose dependent rect. 22 1
61 58.93 precipitation 0.1 30 < th dose independent rect. 22 1
63 58.93 humidity 90.0 30 < th dose dependent rect. 22 1
65 58.93 radiation 40.0 43200 < th dose dependent rect. 23 1
66 58.93 precipitation 0.1 30 < th dose dependent rect. 22 1
67 58.94 wind 1.0 30 > th dose independent rect. 22 1
68 58.94 wind 3.0 30 < th dose independent rect. 22 1
72 58.94 temperature 10.0 30 > th dose independent rect. 22 1
74 58.94 temperature 30.0 30 < th dose independent rect. 22 1
75 58.94 humidity 50.0 30 > th dose independent rect. 22 1
79 58.94 atmosphere 995.0 30 > th dose independent rect. 22 1
80 58.94 atmosphere 1005.0 30 > th dose independent rect. 22 1
81 58.94 atmosphere 1010.0 30 < th dose independent rect. 22 1
83 58.94 radiation 1.0 30 < th dose independent rect. 22 1
88 58.94 temperature 10.0 30 > th dose independent rect. 23 23
89 58.94 wind 9.0 30 < th dose dependent rect. 22 1
91 58.94 radiation 1.0 30 < th dose dependent rect. 22 1
97 58.95 wind 5.0 30 < th dose dependent rect. 22 1
99 58.95 humidity 50.0 30 > th dose dependent rect. 22 1
100 58.96 wind 1.0 30 > th dose dependent rect. 22 1
105 58.98 atmosphere 1015.0 30 < th dose dependent rect. 22 1
106 58.99 wind 9.0 4320 > th dose independent rect. 3 1
138 58.99 wind 9.0 30 < th dose independent rect. 23 23
139 58.99 wind 9.0 4320 > th dose dependent rect. 3 1
174 59.02 temperature 30.0 30 < th dose dependent rect. 22 1
231 59.21 wind 1.0 270 < th dose independent rect. 19 1
234 59.21 wind 1.0 270 < th dose dependent rect. 19 1
237 59.22 wind 1.0 720 < th dose dependent rect. 17 1
248 59.26 wind 1.0 720 < th dose dependent rect. 16 4
289 59.42 wind 1.0 4320 < th dose dependent rect. 15 2
302 59.55 wind 1.0 1440 > th dose independent rect. 19 1
303 59.55 precipitation 0.1 1440 < th dose independent rect. 23 1
307 59.55 precipitation 0.1 1440 < th dose dependent rect. 23 1
308 59.57 precipitation 0.1 30 < th dose independent rect. 23 23
309 59.57 precipitation 0.1 30 < th dose dependent rect. 23 23
318 59.62 wind 9.0 4320 < th dose independent rect. 7 1
322 59.64 atmosphere 995.0 30 > th dose independent rect. 23 23
331 59.68 wind 1.0 4320 < th dose independent rect. 15 2
335 59.72 wind 9.0 4320 < th dose independent rect. 3 1
337 59.75 wind 9.0 4320 < th dose independent rect. 1 8
342 59.75 wind 1.0 720 < th dose dependent rect. 14 7
344 59.76 wind 1.0 4320 < th dose dependent rect. 14 7
346 59.77 wind 9.0 4320 < th dose independent rect. 4 6
349 59.78 wind 1.0 1440 < th dose dependent rect. 8 1
350 59.79 wind 1.0 720 < th dose independent rect. 14 4
366 59.84 wind 1.0 4320 < th dose dependent rect. 14 9
368 59.86 wind 1.0 1440 < th dose independent rect. 7 2
371 59.86 wind 9.0 4320 < th dose independent rect. 1 4
383 59.88 wind 1.0 4320 > th dose independent rect. 14 1
386 59.88 wind 1.0 4320 > th dose independent rect. 14 3
389 59.89 wind 9.0 43200 < th dose independent rect. 4 1
419 59.93 wind 1.0 1440 > th dose independent rect. 7 1
440 59.95 wind 1.0 14400 < th dose independent rect. 14 9
456 59.97 radiation 10.0 10 > th dose independent rect. 6 1
486 59.97 radiation 10.0 10 > th dose dependent rect. 6 1
583 60.02 wind 1.0 14400 < th dose independent rect. 15 6
588 60.02 wind 9.0 4320 > th dose dependent rect. 23 7
603 60.03 wind 9.0 4320 > th dose independent rect. 23 6
607 60.03 wind 1.0 720 < th dose independent rect. 14 6
613 60.03 wind 1.0 720 > th dose independent rect. 15 8
651 60.03 wind 1.0 4320 < th dose dependent rect. 11 10
662 60.04 wind 9.0 43200 > th dose independent rect. 4 2
809 60.07 wind 9.0 4320 < th dose independent rect. 21 12
946 60.12 wind 9.0 43200 > th dose independent rect. 24 6
953 60.12 wind 1.0 14400 > th dose independent rect. 14 10