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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0220000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phi-1 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.77 (0.106) R2 : 0.533
β1 : -9.53 (0.481) R2dD : 0.69 R2D : 0.37
β2 : 1.15 (0.256) R2dC : 0.0207 R2C : 0.00658
β3 : 1.43 (0.469) R2dE : 0.0113 R2E : 0.0309
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12 (2) R2dD*E : 0.0728 R2D*E : -0.236
γ1 : -1.74 (0.218) R2dN8 : 0.0875 R2N8 : -0.00795
σ : 1.91
deviance : 1683.52
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_____
C
peak time of C : 3.12
E
wheather : radiation
threshold : 1.017
memory length : 4555
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 11.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1679.29 1.93 5.77 -9.55 1.15 1.42 -1.14 -12 -1.74 3.11 1.017 4554 18 11.9
1808.17 1.98 5.82 -7.96 1.1 0.913 -1.9 -- -1.72 2.84 0.9871 4557 18.1 13.2
1683.52 1.91 5.77 -9.53 1.15 1.43 -- -12 -1.74 3.12 1.017 4555 18 11.9
1807.29 1.98 5.89 -8.22 1.22 1.17 -- -- -1.74 2.63 0.9801 4551 18.2 14.9
1756.57 1.95 5.77 -9.34 -- 1.68 -- -12 -1.69 -- 1.021 4568 18 11.9
1815.13 2 5.93 -8 1.14 -- -1.52 -- -1.73 3.35 -- -- -- --
1822.1 2 5.93 -7.97 1.14 -- -- -- -1.72 3.62 -- -- -- --
1821.48 1.99 5.94 -8.04 -- 0.995 -- -- -1.7 -- -8.73 1774 17.5 13.9
2851.38 2.49 6.1 -- 1.36 4.52 -- -- -1.98 3.62 9.811 5811 15.1 15.1
1894.97 2.03 5.93 -7.92 -- -- -- -- -1.69 -- -- -- -- --
3495.74 2.77 5.73 -- 0.988 -- -- -- -0.836 3.68 -- -- -- --
2458.55 2.31 6.06 -- -- 4.55 -- -- -1.4 -- 9.987 47347 15.2 15
3549.93 2.78 5.73 -- -- -- -- -- -0.815 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1670.17 humidity 90 14400 < th dose independent rect. 24 7
8 1674.37 humidity 80 14400 > th dose dependent rect. 24 1
11 1676.81 humidity 90 14400 < th dose independent rect. 23 4
16 1679.41 humidity 50 14400 > th dose dependent rect. 24 1
39 1686.97 humidity 90 14400 > th dose independent rect. 24 2
57 1690.88 humidity 90 14400 > th dose independent rect. 22 9
65 1692.34 humidity 80 14400 > th dose dependent rect. 23 8
66 1692.39 wind 9 43200 > th dose dependent rect. 15 1
113 1696.98 humidity 90 14400 > th dose independent rect. 5 1
126 1698.41 humidity 90 14400 < th dose dependent rect. 24 1
136 1699.35 radiation 1 4320 > th dose independent rect. 18 12
142 1699.58 wind 1 14400 < th dose dependent rect. 2 2
161 1701.78 wind 1 14400 < th dose independent rect. 2 1
178 1703.46 radiation 1 14400 < th dose independent rect. 18 12
191 1704.19 radiation 1 14400 < th dose independent rect. 24 6
196 1704.25 radiation 1 14400 < th dose independent rect. 21 9
197 1704.29 radiation 1 14400 < th dose independent rect. 4 2
198 1704.30 radiation 1 14400 < th dose independent rect. 2 4
208 1704.55 radiation 1 14400 > th dose independent rect. 4 2
225 1705.72 wind 9 4320 < th dose independent rect. 15 3
239 1707.27 humidity 90 14400 < th dose independent rect. 4 2
241 1707.33 humidity 90 14400 > th dose independent rect. 4 3
247 1708.08 wind 7 4320 > th dose dependent rect. 15 3
252 1708.59 wind 9 4320 > th dose independent rect. 15 3
259 1709.03 atmosphere 1010 14400 > th dose independent rect. 15 1
273 1710.18 wind 5 720 < th dose independent rect. 20 15
279 1710.44 atmosphere 1010 14400 < th dose independent rect. 15 2
282 1710.48 atmosphere 1010 43200 > th dose dependent rect. 14 2
288 1710.59 wind 7 4320 > th dose dependent rect. 15 6
290 1710.67 wind 1 14400 > th dose independent rect. 2 2
297 1710.87 wind 9 43200 > th dose independent rect. 15 2
314 1711.26 atmosphere 1010 14400 < th dose independent rect. 11 6
329 1711.46 atmosphere 1010 43200 > th dose dependent rect. 20 1
330 1711.47 atmosphere 1010 43200 > th dose dependent rect. 13 8
336 1711.55 wind 7 4320 > th dose dependent rect. 15 1
354 1711.80 radiation 10 43200 > th dose independent rect. 17 1
381 1711.98 wind 9 4320 > th dose independent rect. 15 6
382 1711.99 wind 9 4320 > th dose independent rect. 15 11
386 1712.03 wind 9 4320 > th dose independent rect. 15 9
401 1712.10 humidity 90 14400 < th dose independent sin 10 NA
414 1712.18 radiation 1 14400 < th dose dependent rect. 20 10
418 1712.20 radiation 1 14400 < th dose dependent rect. 23 7
451 1712.56 radiation 1 14400 < th dose dependent rect. 3 3
460 1712.65 humidity 80 14400 > th dose dependent rect. 5 1
475 1712.73 wind 7 4320 > th dose dependent rect. 15 11
480 1712.76 atmosphere 1010 43200 > th dose dependent sin 18 NA
495 1712.89 wind 9 4320 < th dose independent rect. 15 9
536 1713.21 humidity 90 43200 < th dose independent rect. 5 4
737 1714.01 wind 9 4320 > th dose independent rect. 12 14
747 1714.04 atmosphere 1010 43200 > th dose dependent no NA NA
761 1714.11 wind 9 4320 > th dose independent rect. 12 12
763 1714.11 atmosphere 1010 43200 > th dose dependent rect. 19 23
780 1714.17 humidity 80 43200 < th dose independent rect. 17 2
819 1714.31 atmosphere 1010 43200 > th dose dependent rect. 5 1
883 1714.61 atmosphere 1015 43200 > th dose dependent rect. 3 2
920 1714.82 wind 9 4320 > th dose independent sin 16 NA
927 1714.85 humidity 90 43200 > th dose dependent rect. 5 9
949 1714.98 wind 5 720 > th dose independent rect. 21 14
959 1715.03 humidity 90 43200 > th dose dependent rect. 5 11