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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0219900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phi-1 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0386) R2 : 0.0138
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.205 (0.0812) R2dN8 : 0.0178 R2N8 : 0.0138
σ : 0.726
deviance : 242.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
235.52 0.721 2.96 -0.0213 0.108 -0.926 -0.284 5.61 -0.212 10.9 52.17 9 -- --
236.91 0.717 2.97 -0.0512 0.0929 1.24 -0.168 -- -0.2 10.5 48.19 2 -- --
235.83 0.715 2.96 -0.0273 0.109 -0.99 -- 5.66 -0.212 11.2 51.93 8 -- --
236.75 0.717 2.97 -0.0633 0.0941 1.23 -- -- -0.202 10.8 49 10 -- --
236.54 0.716 2.96 -0.0294 -- -0.933 -- 5.65 -0.21 -- 51.75 8 -- --
241.22 0.728 2.97 -0.00287 0.123 -- 0.0178 -- -0.205 11.4 -- -- -- --
241.22 0.727 2.97 -0.0022 0.123 -- -- -- -0.204 11.3 -- -- -- --
237.28 0.717 2.97 -0.0681 -- 1.25 -- -- -0.2 -- 49 11 -- --
236.84 0.717 2.97 -- 0.0964 1.2 -- -- -0.202 10.8 49 9 -- --
242.17 0.727 2.97 -0.00533 -- -- -- -- -0.206 -- -- -- -- --
241.22 0.727 2.97 -- 0.123 -- -- -- -0.204 11.3 -- -- -- --
237.39 0.718 2.97 -- -- 1.24 -- -- -0.195 -- 49 9 -- --
242.17 0.726 2.97 -- -- -- -- -- -0.205 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 225.38 temperature 20.0 270 < th dose dependent rect. 2 1
2 225.67 temperature 20.0 10 < th dose independent rect. 4 1
4 225.76 radiation 1.0 270 > th dose independent rect. 4 1
14 225.76 radiation 1.0 270 > th dose dependent rect. 4 1
24 226.37 temperature 20.0 10 < th dose independent rect. 3 3
29 227.10 temperature 25.0 270 < th dose dependent rect. 24 5
39 227.93 temperature 20.0 270 < th dose independent rect. 1 4
41 228.14 precipitation 0.1 270 > th dose independent rect. 1 1
42 228.14 precipitation 0.1 270 > th dose dependent rect. 1 1
51 228.46 temperature 25.0 90 < th dose dependent rect. 2 6
88 229.53 radiation 1.0 90 < th dose independent rect. 14 1
89 229.53 radiation 1.0 90 < th dose dependent rect. 14 1
101 230.03 temperature 25.0 10 < th dose dependent rect. 3 3
157 230.67 wind 1.0 90 > th dose independent rect. 2 6
159 230.75 atmosphere 1005.0 30 > th dose independent rect. 7 1
201 231.52 humidity 60.0 14400 < th dose dependent rect. 19 1
203 231.57 wind 1.0 30 > th dose independent rect. 2 17
206 231.60 humidity 80.0 720 < th dose independent rect. 23 2
252 232.01 humidity 80.0 720 < th dose dependent rect. 23 2
253 232.03 temperature 30.0 10 < th dose independent rect. 8 6
276 232.24 atmosphere 1005.0 10 < th dose independent rect. 3 3
280 232.25 radiation 1.0 270 > th dose independent rect. 16 22
302 232.27 atmosphere 1005.0 270 < th dose independent rect. 2 1
309 232.31 atmosphere 1000.0 90 < th dose dependent rect. 20 3
313 232.36 humidity 60.0 14400 < th dose independent rect. 19 1
323 232.41 humidity 50.0 10 > th dose independent rect. 3 16
326 232.43 radiation 1.0 270 > th dose independent rect. 5 9
327 232.43 wind 1.0 90 > th dose independent rect. 14 18
336 232.53 humidity 60.0 14400 > th dose independent rect. 19 1
343 232.57 humidity 80.0 10 > th dose independent rect. 8 1
378 232.74 humidity 90.0 30 < th dose dependent rect. 18 20
400 232.92 humidity 60.0 30 < th dose independent rect. 18 18
401 232.93 temperature 15.0 90 > th dose independent rect. 8 6
404 232.96 radiation 1.0 270 > th dose independent sin 4 NA
412 232.99 atmosphere 1000.0 90 < th dose independent rect. 20 3
425 233.04 humidity 50.0 14400 > th dose independent rect. 19 9
428 233.09 atmosphere 1010.0 270 > th dose dependent rect. 11 1
437 233.10 humidity 80.0 10 > th dose independent rect. 3 6
441 233.12 radiation 1.0 270 < th dose dependent sin 3 NA
465 233.18 atmosphere 1005.0 10 < th dose independent rect. 15 3
474 233.22 temperature 30.0 10 < th dose independent rect. 8 19
487 233.23 humidity 60.0 720 > th dose independent rect. 4 7
489 233.23 humidity 90.0 270 < th dose dependent rect. 17 19
490 233.24 atmosphere 1010.0 10 > th dose dependent rect. 12 1
531 233.25 atmosphere 1000.0 90 > th dose independent rect. 14 18
538 233.28 humidity 80.0 1440 > th dose independent rect. 23 2
544 233.33 atmosphere 1005.0 10 < th dose independent rect. 15 16
545 233.33 atmosphere 1015.0 10 < th dose dependent rect. 15 17
563 233.37 humidity 60.0 720 > th dose independent rect. 19 15
567 233.38 humidity 60.0 14400 < th dose dependent rect. 18 15
573 233.40 humidity 90.0 90 < th dose independent rect. 8 6
584 233.42 atmosphere 1010.0 10 < th dose dependent rect. 14 4
595 233.43 humidity 90.0 30 < th dose independent rect. 18 20
597 233.43 radiation 1.0 270 < th dose dependent rect. 5 11
649 233.49 radiation 1.0 270 < th dose dependent rect. 1 15
658 233.52 radiation 1.0 270 < th dose independent sin 4 NA
661 233.52 temperature 30.0 10 < th dose independent rect. 19 19
663 233.52 atmosphere 1005.0 30 > th dose independent rect. 8 23
669 233.53 radiation 1.0 270 < th dose dependent rect. 3 13
674 233.54 humidity 70.0 270 < th dose dependent rect. 17 18
675 233.55 temperature 25.0 30 < th dose dependent rect. 3 13
679 233.56 humidity 60.0 14400 > th dose independent rect. 19 11
682 233.57 atmosphere 1010.0 270 < th dose dependent rect. 14 1
685 233.58 atmosphere 1010.0 270 > th dose independent rect. 10 1
686 233.58 radiation 1.0 270 < th dose independent rect. 24 16
701 233.60 humidity 70.0 90 < th dose dependent rect. 17 20
703 233.62 humidity 50.0 4320 > th dose independent rect. 4 6
735 233.68 wind 1.0 30 > th dose dependent rect. 3 5
742 233.70 wind 1.0 270 > th dose independent rect. 14 15
754 233.72 atmosphere 1015.0 10 < th dose dependent rect. 3 5
766 233.73 radiation 1.0 10 < th dose dependent rect. 3 16
769 233.74 wind 9.0 90 < th dose independent rect. 14 18
806 233.83 temperature 20.0 30 > th dose independent rect. 14 4
818 233.85 wind 9.0 90 < th dose independent rect. 8 6
833 233.86 wind 9.0 1440 > th dose dependent rect. 16 1
847 233.89 radiation 1.0 270 < th dose independent rect. 5 11
869 233.93 humidity 90.0 720 < th dose independent rect. 19 1
876 233.94 atmosphere 1000.0 10 > th dose independent rect. 19 8
885 233.95 humidity 90.0 10 < th dose dependent rect. 20 18
892 233.97 precipitation 0.1 90 < th dose independent rect. 14 18
894 233.97 precipitation 0.1 90 < th dose dependent rect. 14 18
898 233.98 atmosphere 1000.0 90 > th dose independent rect. 8 6
901 233.98 radiation 1.0 10 < th dose dependent rect. 3 14
912 234.00 atmosphere 1015.0 10 < th dose dependent rect. 3 16
924 234.02 temperature 10.0 1440 > th dose independent rect. 9 6
930 234.02 temperature 10.0 1440 > th dose independent rect. 15 18
957 234.05 humidity 80.0 90 > th dose independent rect. 2 14
966 234.06 atmosphere 1015.0 90 < th dose independent rect. 8 6
967 234.06 precipitation 0.1 90 < th dose independent rect. 8 6
972 234.06 temperature 10.0 90 > th dose independent rect. 14 18
973 234.06 precipitation 0.1 90 < th dose dependent rect. 8 6
983 234.08 radiation 40.0 10 < th dose independent rect. 15 17