Os06g0219600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Poly(A)-binding protein II-like.
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Os06g0219600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Poly(A)-binding protein II-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.43 | 0.246 | 11.6 | 0.171 | 0.331 | 1.2 | -0.492 | 1.36 | 0.0352 | 21 | 24.48 | 114 | -- | -- |
| 30.08 | 0.255 | 11.6 | 0.371 | 0.372 | 1.06 | -0.276 | -- | 0.0981 | 20.4 | 25.42 | 131 | -- | -- |
| 28.04 | 0.247 | 11.6 | 0.203 | 0.346 | 1.21 | -- | 1.31 | 0.0534 | 20.5 | 24.58 | 135 | -- | -- |
| 30.24 | 0.256 | 11.6 | 0.4 | 0.414 | 1.1 | -- | -- | 0.116 | 19.5 | 27.03 | 118 | -- | -- |
| 33.99 | 0.273 | 11.6 | 0.24 | -- | 1.23 | -- | 1.04 | 0.0446 | -- | 24.2 | 67 | -- | -- |
| 46.47 | 0.32 | 11.6 | 0.108 | 0.41 | -- | -0.306 | -- | -0.116 | 22.3 | -- | -- | -- | -- |
| 46.85 | 0.321 | 11.6 | 0.12 | 0.412 | -- | -- | -- | -0.115 | 22.3 | -- | -- | -- | -- |
| 35.83 | 0.28 | 11.6 | 0.38 | -- | 1.13 | -- | -- | 0.0813 | -- | 24.42 | 10 | -- | -- |
| 33.79 | 0.271 | 11.6 | -- | 0.366 | 0.914 | -- | -- | 0.0335 | 20.7 | 25.38 | 114 | -- | -- |
| 57.17 | 0.353 | 11.6 | 0.126 | -- | -- | -- | -- | -0.114 | -- | -- | -- | -- | -- |
| 47.22 | 0.321 | 11.7 | -- | 0.412 | -- | -- | -- | -0.128 | 22.3 | -- | -- | -- | -- |
| 39.3 | 0.292 | 11.6 | -- | -- | 0.984 | -- | -- | 0.0369 | -- | 25.05 | 2 | -- | -- |
| 57.58 | 0.354 | 11.6 | -- | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.69 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 3 | 27.81 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 4 | 27.84 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 5 | 27.88 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 6 | 27.90 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 8 | 27.92 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 10 | 27.98 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 12 | 28.00 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 16 | 28.08 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 17 | 28.10 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 20 | 28.14 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 41 | 28.53 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 114 | 29.07 | temperature | 15 | 270 | > th | dose dependent | sin | 11 | NA |
| 214 | 29.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 241 | 29.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 276 | 30.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 302 | 30.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 318 | 30.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 351 | 30.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 16 |
| 451 | 30.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 17 |
| 495 | 30.65 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 502 | 30.66 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 510 | 30.67 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 636 | 30.92 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 692 | 31.02 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 902 | 31.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 934 | 31.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 971 | 31.52 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |