Os06g0218200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, SWIM-type domain containing protein.
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Os06g0218200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, SWIM-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.74 | 0.3 | 10.6 | -0.945 | 0.0842 | 0.715 | -0.0132 | 0.553 | -0.0911 | 10.7 | 9.754 | 4167 | -- | -- |
| 41.01 | 0.298 | 10.6 | -1.05 | 0.101 | 0.698 | 0.00232 | -- | -0.12 | 10.8 | 10.39 | 3973 | -- | -- |
| 40.74 | 0.297 | 10.6 | -0.945 | 0.0855 | 0.715 | -- | 0.551 | -0.0909 | 10.7 | 9.745 | 4150 | -- | -- |
| 41 | 0.298 | 10.6 | -1.07 | 0.0991 | 0.701 | -- | -- | -0.126 | 10.6 | 9.963 | 3962 | -- | -- |
| 41.07 | 0.298 | 10.6 | -0.947 | -- | 0.717 | -- | 0.576 | -0.0895 | -- | 10.32 | 4396 | -- | -- |
| 49.74 | 0.331 | 10.5 | -0.754 | 0.0645 | -- | -0.0553 | -- | 0.0106 | 8.49 | -- | -- | -- | -- |
| 49.75 | 0.33 | 10.5 | -0.756 | 0.0646 | -- | -- | -- | 0.0106 | 8.47 | -- | -- | -- | -- |
| 41.23 | 0.299 | 10.6 | -1.05 | -- | 0.619 | -- | -- | -0.12 | -- | 18.1 | 4412 | -- | -- |
| 61.44 | 0.365 | 10.5 | -- | 0.0569 | 0.269 | -- | -- | 0.132 | 10.8 | 28.82 | 4388 | -- | -- |
| 49.99 | 0.33 | 10.5 | -0.756 | -- | -- | -- | -- | 0.0112 | -- | -- | -- | -- | -- |
| 64.81 | 0.377 | 10.5 | -- | 0.0633 | -- | -- | -- | 0.0948 | 9.36 | -- | -- | -- | -- |
| 60.57 | 0.362 | 10.5 | -- | -- | -0.335 | -- | -- | 0.199 | -- | 13.6 | 47520 | -- | -- |
| 65.05 | 0.376 | 10.5 | -- | -- | -- | -- | -- | 0.0951 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 2 | 39.32 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 4 | 39.44 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 5 | 39.44 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 6 | 39.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 11 | 39.67 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 12 | 39.68 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 15 | 39.68 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 155 | 40.05 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 178 | 40.08 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 196 | 40.10 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 220 | 40.12 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 15 | 16 |
| 247 | 40.16 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 274 | 40.17 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 280 | 40.18 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 11 | NA |
| 337 | 40.23 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 343 | 40.24 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 354 | 40.25 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 357 | 40.25 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 400 | 40.29 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 432 | 40.32 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 453 | 40.33 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 455 | 40.33 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 507 | 40.36 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 16 | 14 |
| 513 | 40.37 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 657 | 40.47 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 15 | 3 |
| 696 | 40.50 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 764 | 40.54 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 783 | 40.55 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 784 | 40.55 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 793 | 40.55 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 15 | 13 |
| 868 | 40.59 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 909 | 40.61 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 919 | 40.62 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 920 | 40.62 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 946 | 40.63 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 974 | 40.64 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 6 |