BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0218200 Os06g0218200|AK120566
(515 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720 109 4e-24
AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751 88 9e-18
AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786 87 3e-17
AT1G52520.1 | chr1:19565933-19568248 FORWARD LENGTH=704 52 5e-07
>AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720
Length = 719
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 156/348 (44%), Gaps = 26/348 (7%)
Query: 3 CRPYISIDSTALNGYWNGHMPAANALDGHNWMFPLAFGFFDSETKENWVWFMEQLANAIG 62
CRP I +D+ +LNG + + A+ +D N FPLAF + ++W WF ++ +
Sbjct: 375 CRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTKEVSTDSWRWFFTKIREKVT 434
Query: 63 PVPKLAIHTDACKGLETAVHK-----VFPWAEQRECMRHLMENMKKLFHGSIYARKMWPA 117
L + + + + V++ PWA + C+ HL +F + A
Sbjct: 435 QRKDLCLISSPLRDIVAVVNEPGSLWQEPWAHHKFCLNHLRSQFLGVFRDYNLESLVEQA 494
Query: 118 AKTYMLEKHDKWMDEVTTASPEVKQWLKEYHNLLWARSKFDCAIKCDYINNNLAESWNSW 177
T E+ D +M+++ +PE +WL + WA + D ++ I + +
Sbjct: 495 GSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWALAH-DSGLRYGIIEIDR----EAL 549
Query: 178 IKDLKDLPVDALADAIREKTLILFEKRR--------RISTALN-GVILPV-VIHQLNEAS 227
+ P + A+ +++F++ R I ++LN GV+ + +L E
Sbjct: 550 FAVCRGFPYCTV--AMTGGVMLMFDELRSSFDKSLSSIYSSLNRGVVYTEPFMDKLEEFM 607
Query: 228 KGLGHLKVTKGNPDQAEVTETYKDEEVTRHVVYLDKWTCTCREWQVTGKPCPHALALITT 287
+T+ D +V+E+ + EE +V L+ TCTCR++Q PC HALA+
Sbjct: 608 TDSIPYVITQLERDSFKVSESSEKEE---WIVQLNVSTCTCRKFQSYKFPCLHALAVFEK 664
Query: 288 IRQPNMEKYVDTAYSVHRFQVAYASVIPNITDKKQWPKVDKGFKLLPP 335
++ N +YVD Y+V ++ YA+ + D WP+ + L PP
Sbjct: 665 LK-INPLQYVDECYTVEQYCKTYAATFSPVPDVAAWPEDCRVPTLFPP 711
>AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751
Length = 750
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 144/355 (40%), Gaps = 42/355 (11%)
Query: 3 CRPYISIDSTALNGYWNGHMPAANALDGHNWMFPLAFGFFDSETKENWVWFMEQLANAIG 62
CRP I +D+ LN + + A+ +D N FPLAF + + W WF+ + +
Sbjct: 382 CRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAVTKEVSTDIWRWFLTGIREKVT 441
Query: 63 PVPKLAI----HTDACKGL-ETAVHKVFPWAEQRECMRHLMENMKKLFHGSIYARKMWPA 117
L + H D + E+ PWA R + H ++F ++ A
Sbjct: 442 QRKGLCLISSPHPDIIAVVNESGSQWQEPWAYHRFSLNHFYSQFSRVFPSFCLGARIRRA 501
Query: 118 AKTYMLEKHDKWMDEVTTASPEVKQWLKEYHNLLWARSKFDCAIKCDYINNNLAESWNSW 177
T ++ +M+++ +PE ++WL ++ WA + ++ +
Sbjct: 502 GSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWA------------LAHDNGRRYG-- 547
Query: 178 IKDLKDLPVDALADAIRE-------KTLILFEKRR----------RISTALNGVILPVVI 220
I ++ + A+ +A + L+LF++ R R S V V+
Sbjct: 548 IMEINTKALFAVCNAFEQAGHVVTGSVLLLFDELRSKFDKSFSCSRSSLNCGDVYTEPVM 607
Query: 221 HQLNEASKGLGHLK--VTKGNPDQAEVTETYKDEEVTRHVVYLDKWTCTCREWQVTGKPC 278
+L E VT + + +V E +V L +CTC ++Q PC
Sbjct: 608 DKLEEFRTTFVTYSYIVTPLDNNAFQVATALDKGEC---IVQLSDCSCTCGDFQRYKFPC 664
Query: 279 PHALALITTIRQPNMEKYVDTAYSVHRFQVAYASVIPNITDKKQWPKVDKGFKLL 333
HALA+ ++ N +YVD Y++ R + YA++ ++ + WP+ +LL
Sbjct: 665 LHALAVCKKLKF-NPLQYVDDCYTLERLKRTYATIFSHVPEMSAWPEASGVPRLL 718
>AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786
Length = 785
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 142/352 (40%), Gaps = 41/352 (11%)
Query: 3 CRPYISIDSTALNGYWNGHMPAANALDGHNWMFPLAFGFFDSETKENWVWFMEQLANAIG 62
CRP I +D+ L G + + A+A D N FPLAF + ++W WF+ ++ +
Sbjct: 378 CRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAVTKEVSVDSWRWFLTRIREKVT 437
Query: 63 PVPKLAIHTDACKGLETAVHKVF-----PWAEQRECMRHLMENMKKLFHGSIYARKMW-- 115
+ + + + +++ PWA R C+ HL + + G Y
Sbjct: 438 QRQGICLISSPDPDILAVINEPGSQWKEPWAYHRFCLYHLCSKLCSVSPGFDYNMHFLVD 497
Query: 116 PAAKTYMLEKHDKWMDEVTTASPEVKQWLKEYHNLLWARSKFD----CAIKCDYINNNLA 171
A + E+ D +M E+ +PE +WL ++ WA + D ++ D
Sbjct: 498 EAGSSSQKEEFDSYMKEIKERNPEAWKWLDQFPPHQWALAHDDGRRYGIMRID------T 551
Query: 172 ESWNSWIKDLKDLPVDA--------LADAIREKTLILFEKRRRISTALNGVILPVVIHQL 223
E+ + K + + + L DA E K R S V V+ +L
Sbjct: 552 EALFAVCKRFRKVAMAGGVMLLFGQLKDAFAESF-----KLSRGSLKHGDVYTEHVMEKL 606
Query: 224 N--EASKGLGHLKVTKGNPDQAEVTETYK--------DEEVTRHVVYLDKWTCTCREWQV 273
E + +T D +V+ K + T +V L+ TCTC E+Q
Sbjct: 607 EEFETDSDTWVITITPLERDAYQVSMAPKKKTRLMGQSNDSTSGIVQLNDTTCTCGEFQK 666
Query: 274 TGKPCPHALALITTIRQPNMEKYVDTAYSVHRFQVAYASVIPNITDKKQWPK 325
PC HALA+ ++ N +YVD Y+V R+ Y++ + + WP+
Sbjct: 667 NKFPCLHALAVCDELK-INPLQYVDDCYTVERYHKTYSAKFSPVPELSAWPE 717
>AT1G52520.1 | chr1:19565933-19568248 FORWARD LENGTH=704
Length = 703
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 7 ISIDSTALNGYWNGHMPAANALDGHNWMFPLAFGFFDSETKENWVWFMEQLANAIGPVPK 66
I IDS+ ++G + + ++ H L+ GF ET E++ W ++ + + P+
Sbjct: 298 IFIDSSYISGKFEIPLVTFTGVNHHGKTTLLSCGFLAGETMESYHWLLKVWLSVMKRSPQ 357
Query: 67 LAIHTDACKGLETAVHKVFPWAEQRECMRHLMENMKKLFHG 107
I TD CK LE A+ +VFP + QR + H+M + + G
Sbjct: 358 -TIVTDRCKPLEAAISQVFPRSHQRFSLTHIMRKIPEKLGG 397
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,486,132
Number of extensions: 416587
Number of successful extensions: 1049
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1041
Number of HSP's successfully gapped: 7
Length of query: 515
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 412
Effective length of database: 8,282,721
Effective search space: 3412481052
Effective search space used: 3412481052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)