Os06g0217500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MED6 mediator family protein.
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Os06g0217500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MED6 mediator family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.42 | 0.19 | 11.4 | 0.15 | 0.511 | 0.424 | 0.381 | 0.719 | 0.22 | 1.22 | 22 | 1598 | -- | -- |
| 17.69 | 0.196 | 11.4 | -0.054 | 0.514 | 0.404 | 0.388 | -- | 0.145 | 1.17 | 22.28 | 1521 | -- | -- |
| 16.99 | 0.192 | 11.4 | 0.138 | 0.506 | 0.422 | -- | 0.718 | 0.218 | 1.19 | 22.01 | 1522 | -- | -- |
| 18.19 | 0.199 | 11.4 | -0.0965 | 0.509 | 0.41 | -- | -- | 0.154 | 1.14 | 22.2 | 1530 | -- | -- |
| 27.26 | 0.243 | 11.4 | -0.000674 | -- | 0.514 | -- | 0.354 | 0.156 | -- | 24.8 | 1003 | -- | -- |
| 23.56 | 0.228 | 11.4 | 0.0777 | 0.514 | -- | 0.356 | -- | 0.299 | 1.26 | -- | -- | -- | -- |
| 24.08 | 0.23 | 11.4 | 0.0653 | 0.513 | -- | -- | -- | 0.297 | 1.26 | -- | -- | -- | -- |
| 27.44 | 0.244 | 11.4 | -0.108 | -- | 0.58 | -- | -- | 0.0903 | -- | 24.74 | 1000 | -- | -- |
| 18.34 | 0.199 | 11.4 | -- | 0.5 | 0.372 | -- | -- | 0.177 | 1.2 | 22.4 | 1496 | -- | -- |
| 40.36 | 0.297 | 11.4 | 0.0853 | -- | -- | -- | -- | 0.307 | -- | -- | -- | -- | -- |
| 24.19 | 0.23 | 11.4 | -- | 0.514 | -- | -- | -- | 0.29 | 1.26 | -- | -- | -- | -- |
| 27.7 | 0.245 | 11.4 | -- | -- | 0.559 | -- | -- | 0.113 | -- | 24.81 | 996 | -- | -- |
| 40.55 | 0.297 | 11.4 | -- | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.67 | temperature | 25 | 720 | < th | dose dependent | sin | 20 | NA |
| 3 | 16.69 | temperature | 25 | 90 | < th | dose dependent | sin | 17 | NA |
| 4 | 16.71 | temperature | 25 | 10 | < th | dose dependent | sin | 16 | NA |
| 5 | 16.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 9 | 16.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 10 | 16.75 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 12 | 16.75 | temperature | 25 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 13 | 16.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 5 |
| 15 | 16.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 19 | 16.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 5 |
| 20 | 16.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 7 |
| 38 | 16.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 42 | 16.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 61 | 16.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 86 | 16.83 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 154 | 16.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 188 | 16.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 20 |
| 219 | 16.92 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 236 | 16.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 258 | 16.95 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 275 | 16.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 284 | 16.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 285 | 16.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 287 | 16.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 289 | 16.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 312 | 16.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 350 | 16.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 351 | 16.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 455 | 17.04 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 504 | 17.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 553 | 17.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 665 | 17.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 676 | 17.19 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 16 |
| 722 | 17.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 11 |
| 768 | 17.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 787 | 17.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 8 |
| 790 | 17.27 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 799 | 17.27 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 14 |
| 808 | 17.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 832 | 17.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 16 |
| 838 | 17.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 11 |
| 852 | 17.29 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 853 | 17.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 911 | 17.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 917 | 17.33 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 923 | 17.33 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 21 |