BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0217500 Os06g0217500|AK102305
         (242 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21350.2  | chr3:7517106-7518587 FORWARD LENGTH=299            287   3e-78

>AT3G21350.2 | chr3:7517106-7518587 FORWARD LENGTH=299
          Length = 298

 Score =  287 bits (735), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 148/269 (55%), Positives = 170/269 (63%), Gaps = 43/269 (15%)

Query: 16  GTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDLTCNNESLRSRQIHPLDMSHLTKM 75
           GTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR R IHPLD+SHL+KM
Sbjct: 30  GTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHPLDLSHLSKM 89

Query: 76  TGMEYVLSDVMEPHLFVIRKQRRESPEKSNAMLAYYILDGSIYQAPQLCSVFASRISRAM 135
           TG+EY+L+D  EP+LFV RKQ+R+ PEK   ML YYILDGSIYQAPQLCSVFA+R+SR +
Sbjct: 90  TGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRTI 149

Query: 136 HHISKAFTTACSKLEKIGH----------------------------------------- 154
           ++ISKAFT A SKLE I                                           
Sbjct: 150 YNISKAFTDAASKLETIRQDLQVCLVAIVLSLSVNLGSYFLLIFKLMANGEQVYGFNKFL 209

Query: 155 VETEPDTAASESKTQKEAIDLKELKRVDHILMSLQRKLQXXXXXXXXXEGYVPSEQ--EK 212
            +TE     +ESK   E +DLKE+KRVD IL SL RKL          EGYV  E   EK
Sbjct: 210 FDTENQNEPAESKPASETVDLKEMKRVDVILTSLYRKLAPPPPPPPFPEGYVSQEALGEK 269

Query: 213 ASDDLLASEALPPQVDPIIDQGPAKRPRF 241
                   E+ PPQVDPIIDQGPAKR +F
Sbjct: 270 EELGTQGGESQPPQVDPIIDQGPAKRMKF 298



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,670,340
Number of extensions: 169769
Number of successful extensions: 453
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 2
Length of query: 242
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 146
Effective length of database: 8,474,633
Effective search space: 1237296418
Effective search space used: 1237296418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)