Os06g0216700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os06g0216700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 250.08 | 0.743 | 10.3 | -1.63 | 4.09 | 3.52 | 2.67 | -2.01 | -0.614 | 8.06 | 14.23 | 214 | 1.41 | 14 |
| 253.83 | 0.742 | 10.3 | -1.45 | 4.03 | 3.58 | 1.87 | -- | -0.568 | 7.97 | 13.93 | 209 | 1.47 | 14.1 |
| 264.28 | 0.757 | 10.3 | -1.44 | 4.09 | 3.54 | -- | -0.319 | -0.623 | 7.99 | 14.34 | 208 | 1.48 | 14.1 |
| 263.72 | 0.756 | 10.3 | -1.4 | 4.08 | 3.58 | -- | -- | -0.581 | 7.97 | 14.44 | 208 | 1.5 | 14 |
| 403.51 | 0.936 | 10.2 | -1.38 | -- | 6.65 | -- | -1.5 | -0.333 | -- | 0.1898 | 259 | 0.23 | 13.9 |
| 373.42 | 0.906 | 10.2 | -0.985 | 5.92 | -- | 2.12 | -- | -0.245 | 9.05 | -- | -- | -- | -- |
| 389.03 | 0.924 | 10.2 | -0.911 | 5.91 | -- | -- | -- | -0.243 | 9.06 | -- | -- | -- | -- |
| 342.75 | 0.862 | 10.5 | -1.47 | -- | 6.26 | -- | -- | -0.704 | -- | 3.098 | 329 | 0.00127 | 12.8 |
| 311.64 | 0.822 | 10.3 | -- | 3.87 | 3.44 | -- | -- | -0.384 | 8 | 11.41 | 221 | 1.5 | 13.8 |
| 2400.81 | 2.29 | 10.3 | -0.922 | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
| 410.9 | 0.948 | 10.1 | -- | 5.91 | -- | -- | -- | -0.142 | 9.07 | -- | -- | -- | -- |
| 385 | 0.914 | 10.4 | -- | -- | 5.81 | -- | -- | -0.384 | -- | -15.41 | 315 | 0.0167 | 13.7 |
| 2423.24 | 2.3 | 10.3 | -- | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 253.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 14 |
| 8 | 257.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 77 | 272.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 122 | 276.64 | temperature | 20 | 30 | > th | dose dependent | rect. | 10 | 8 |
| 137 | 278.23 | humidity | 80 | 270 | < th | dose independent | rect. | 10 | 5 |
| 148 | 279.18 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 169 | 280.67 | temperature | 20 | 90 | > th | dose dependent | sin | 1 | NA |
| 185 | 281.80 | humidity | 80 | 10 | < th | dose independent | rect. | 12 | 6 |
| 187 | 281.95 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 5 |
| 245 | 284.68 | humidity | 90 | 270 | < th | dose dependent | rect. | 10 | 5 |
| 280 | 285.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 284 | 286.18 | humidity | 90 | 10 | < th | dose dependent | rect. | 12 | 6 |
| 319 | 287.42 | radiation | 10 | 270 | > th | dose independent | rect. | 10 | 5 |
| 356 | 288.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 14 |
| 378 | 289.49 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 14 |
| 478 | 291.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 480 | 291.85 | radiation | 10 | 90 | < th | dose dependent | sin | 19 | NA |
| 524 | 292.64 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 554 | 293.35 | radiation | 10 | 10 | < th | dose dependent | sin | 16 | NA |
| 613 | 294.66 | humidity | 60 | 10 | > th | dose dependent | rect. | 7 | 14 |
| 637 | 295.10 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 668 | 295.80 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 734 | 297.32 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 10 | 5 |
| 737 | 297.38 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 764 | 297.87 | radiation | 1 | 30 | > th | dose independent | rect. | 12 | 7 |
| 787 | 298.07 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 799 | 298.19 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 21 |
| 815 | 298.40 | radiation | 40 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 820 | 298.46 | humidity | 90 | 10 | < th | dose dependent | rect. | 12 | 17 |
| 853 | 298.95 | radiation | 1 | 30 | > th | dose independent | sin | 19 | NA |
| 886 | 299.47 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 921 | 299.95 | humidity | 50 | 270 | > th | dose independent | rect. | 15 | 19 |
| 970 | 300.45 | humidity | 50 | 270 | > th | dose dependent | rect. | 5 | 14 |
| 990 | 300.64 | radiation | 1 | 30 | < th | dose independent | sin | 19 | NA |