BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0216700 Os06g0216700|AK101397
         (149 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G15780.1  | chr2:6873666-6874701 REVERSE LENGTH=258            128   1e-30
AT2G15770.1  | chr2:6871257-6872245 REVERSE LENGTH=302             84   3e-17
AT4G34300.1  | chr4:16412773-16413714 FORWARD LENGTH=314           60   4e-10
AT4G33930.1  | chr4:16264389-16265420 REVERSE LENGTH=344           58   2e-09

>AT2G15780.1 | chr2:6873666-6874701 REVERSE LENGTH=258
          Length = 257

 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 75/113 (66%), Gaps = 2/113 (1%)

Query: 29  ERFVVGDAARWTWGYNYTDWVIKKGPFFQNDSLVFMYDPPNATTHAHSVYMMRNAADYQS 88
            + +VG    WT+G+NY DW  K  PFF ND LVF Y+PP   TH  SVY++ N + Y+ 
Sbjct: 142 RKIIVGGDKEWTYGFNYADWASKTAPFFLNDILVFKYNPPAPFTH--SVYLLPNPSSYEK 199

Query: 89  CNLKAAKLVANVMQGAGSGYEFVLRKRKPHYFVCGERGGIHCTMGQMKFIVKP 141
           C++K  K++A+  QGAG G+EFVL++ KP+Y  CGE  G HC+ G MKF V P
Sbjct: 200 CDVKKGKMIASPKQGAGKGFEFVLKQMKPYYISCGEHDGAHCSNGTMKFTVMP 252



>AT2G15770.1 | chr2:6871257-6872245 REVERSE LENGTH=302
          Length = 301

 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 2/113 (1%)

Query: 29  ERFVVGDAARWTWGYNYTDWVIKKGPFFQNDSLVFMYDPPNATTHAHSVYMMRNAADYQS 88
           ++ +VG +  W  G +Y DW  K  PF+ ND LVF YD   +    ++VY+ ++   Y +
Sbjct: 144 KKIIVGGSDGWKKGLDYKDWASKNAPFYVNDVLVFKYDK--SAKRRNNVYLFKDRWSYMN 201

Query: 89  CNLKAAKLVANVMQGAGSGYEFVLRKRKPHYFVCGERGGIHCTMGQMKFIVKP 141
           C++K A+ + +  +G+   + F L+K +P++F  GE  G +C    MKF + P
Sbjct: 202 CDIKNARKIGSTRKGSEESFNFTLKKIQPYFFASGEHDGDYCRNHNMKFTIFP 254



>AT4G34300.1 | chr4:16412773-16413714 FORWARD LENGTH=314
          Length = 313

 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 12/112 (10%)

Query: 39  WTWGYNYTDWVIKKGPFFQNDSLVFMYDPPNAT---------THAHSVYMMRNAADYQSC 89
           W  GY YT+W  K  PF+ ND LVF Y+  + T            + VY++ +   ++ C
Sbjct: 198 WKNGYGYTEWTAKHAPFYVNDVLVFTYNNNDQTQSKTKHHHDKKKNDVYLLPDMKSFKRC 257

Query: 90  NLKAAKLVANVMQGAGSGYEFVLRKRKPHYFVCGERGGIHCTMGQMKFIVKP 141
           N+   K +      +  G++ +LRK   +YFV G+     C    MKF V P
Sbjct: 258 NVARGKKLVARGGSSSRGFKLLLRKVHTYYFVSGDHND--CNH-NMKFSVHP 306



>AT4G33930.1 | chr4:16264389-16265420 REVERSE LENGTH=344
          Length = 343

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 11/111 (9%)

Query: 39  WTWGYNYTDWVIKKGPFFQNDSLVFMYDPPNATT--------HAHSVYMMRNAADYQSCN 90
           W  GY YT+W  K  PF+ +D LVF Y+  + T           + VY++ +   ++ CN
Sbjct: 229 WKNGYGYTEWTAKHAPFYVSDVLVFKYNNDDQTQSKTKHRNKKKNDVYLLPDMKSFKRCN 288

Query: 91  LKAAKLVANVMQGAGSGYEFVLRKRKPHYFVCGERGGIHCTMGQMKFIVKP 141
           +   K +      +  G++ +LRK + +YF  G+     C    MKF V P
Sbjct: 289 VARGKKLVARGGSSSRGFKLLLRKVQTYYFASGDHN--ECNH-NMKFSVHP 336



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,928,207
Number of extensions: 103614
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 4
Length of query: 149
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 60
Effective length of database: 8,666,545
Effective search space: 519992700
Effective search space used: 519992700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 107 (45.8 bits)