Os06g0215200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, U1-type domain containing protein.
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Os06g0215200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, U1-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.26 | 0.217 | 10.7 | -0.464 | 0.742 | -0.758 | 0.745 | -0.162 | 0.104 | 3.85 | 19.6 | 3169 | -- | -- |
| 21.27 | 0.215 | 10.7 | -0.457 | 0.74 | -0.69 | 0.745 | -- | 0.105 | 3.84 | 19.7 | 3153 | -- | -- |
| 22.8 | 0.222 | 10.7 | -0.441 | 0.747 | -1.07 | -- | -0.943 | 0.113 | 3.96 | 18.8 | 3217 | -- | -- |
| 22.86 | 0.223 | 10.7 | -0.477 | 0.75 | -0.678 | -- | -- | 0.0983 | 3.98 | 19.8 | 3199 | -- | -- |
| 52.64 | 0.338 | 10.7 | -0.408 | -- | -1.28 | -- | -1.2 | 0.125 | -- | 18.8 | 2699 | -- | -- |
| 25.69 | 0.238 | 10.7 | -0.208 | 0.752 | -- | 0.701 | -- | 0.198 | 3.86 | -- | -- | -- | -- |
| 27.1 | 0.244 | 10.7 | -0.217 | 0.759 | -- | -- | -- | 0.194 | 3.99 | -- | -- | -- | -- |
| 52.95 | 0.339 | 10.7 | -0.456 | -- | -0.719 | -- | -- | 0.0987 | -- | 20.18 | 2708 | -- | -- |
| 26.74 | 0.241 | 10.7 | -- | 0.758 | -0.485 | -- | -- | 0.185 | 3.96 | 19.76 | 1693 | -- | -- |
| 58.53 | 0.357 | 10.7 | -0.186 | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
| 28.34 | 0.249 | 10.7 | -- | 0.754 | -- | -- | -- | 0.218 | 4 | -- | -- | -- | -- |
| 57.06 | 0.352 | 10.7 | -- | -- | -0.325 | -- | -- | 0.164 | -- | 26.1 | 2621 | -- | -- |
| 59.45 | 0.36 | 10.7 | -- | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.00 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 3 | 19.04 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 7 | 19.18 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 8 | 19.22 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 9 | 19.23 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 10 | 19.24 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 23 | 19.28 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 20 |
| 24 | 19.29 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 27 | 19.30 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 50 | 19.37 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 17 |
| 53 | 19.39 | wind | 9 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 63 | 19.41 | wind | 7 | 43200 | > th | dose dependent | rect. | 4 | 15 |
| 69 | 19.42 | wind | 7 | 43200 | > th | dose dependent | rect. | 7 | 12 |
| 82 | 19.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 9 |
| 122 | 19.48 | wind | 9 | 43200 | > th | dose independent | sin | 23 | NA |
| 144 | 19.50 | wind | 9 | 43200 | < th | dose independent | rect. | 6 | 13 |
| 171 | 19.51 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 200 | 19.53 | wind | 9 | 43200 | > th | dose dependent | sin | 18 | NA |
| 206 | 19.53 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 17 |
| 223 | 19.54 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 22 |
| 228 | 19.54 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 253 | 19.55 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 255 | 19.55 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 283 | 19.56 | wind | 7 | 43200 | > th | dose dependent | sin | 23 | NA |
| 290 | 19.57 | wind | 9 | 43200 | > th | dose independent | no | NA | NA |
| 301 | 19.57 | wind | 3 | 43200 | > th | dose dependent | rect. | 16 | 13 |
| 358 | 19.61 | wind | 7 | 43200 | < th | dose independent | sin | 14 | NA |
| 386 | 19.62 | wind | 9 | 43200 | < th | dose independent | sin | 23 | NA |
| 387 | 19.62 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 388 | 19.62 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 406 | 19.62 | humidity | 90 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 418 | 19.63 | wind | 7 | 43200 | > th | dose independent | sin | 14 | NA |
| 446 | 19.63 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 19 |
| 508 | 19.66 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 533 | 19.67 | wind | 1 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 545 | 19.67 | wind | 3 | 43200 | > th | dose dependent | sin | 14 | NA |
| 563 | 19.68 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 589 | 19.68 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 628 | 19.69 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 644 | 19.70 | wind | 9 | 43200 | < th | dose independent | no | NA | NA |
| 676 | 19.71 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 692 | 19.71 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 743 | 19.74 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 745 | 19.74 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 773 | 19.74 | wind | 9 | 14400 | > th | dose dependent | rect. | 17 | 20 |
| 776 | 19.74 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 793 | 19.76 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 818 | 19.77 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 833 | 19.77 | wind | 5 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 848 | 19.78 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 865 | 19.78 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 18 |
| 870 | 19.79 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 902 | 19.80 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 920 | 19.81 | wind | 7 | 43200 | > th | dose dependent | sin | 14 | NA |
| 939 | 19.82 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 944 | 19.82 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 975 | 19.83 | humidity | 80 | 43200 | > th | dose independent | sin | 10 | NA |
| 977 | 19.83 | radiation | 30 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 986 | 19.83 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 1000 | 19.84 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 1 |