BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0215200 Os06g0215200|AK065717
         (243 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49590.1  | chr1:18354997-18356409 FORWARD LENGTH=243          206   7e-54
AT3G54230.2  | chr3:20073872-20080142 FORWARD LENGTH=1009          49   3e-06

>AT1G49590.1 | chr1:18354997-18356409 FORWARD LENGTH=243
          Length = 242

 Score =  206 bits (525), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 110/245 (44%), Positives = 140/245 (57%), Gaps = 12/245 (4%)

Query: 1   MTEYWVSQGNKWCDFCKIYIANNPLSIRTHEIGKRHKDNVTKRLATMXXXXXXXXXXXXX 60
           MTEYWVSQGNKWC+FCKI+I NNP SIR H++GKRH++ V K+L  M             
Sbjct: 1   MTEYWVSQGNKWCEFCKIWIQNNPTSIRNHDLGKRHRECVDKKLTDMRERSAAKDKELKK 60

Query: 61  XXXXXXXIEAKAKKSYQKDLENSQRNVDGDTSAAPGDG---WEFDSTSGYYYDKSTGLYF 117
                  IEAKA +SYQKD+  +Q+    +   AP DG   W  DS SGYYY+++ GL++
Sbjct: 61  NEKLLQQIEAKATRSYQKDIATAQQVAKAN--GAPEDGTSDWMLDSASGYYYNQTNGLHY 118

Query: 118 DSNSGFYYSDGLGKWVTQEEAYAWAKTXXXXXXXXXXXXTKPTASVATVPTIKGGQAPGL 177
           DS SGFYYSD +G WVTQ+EAYA  KT             KP +S    P++  G+ PG 
Sbjct: 119 DSQSGFYYSDSIGHWVTQDEAYAAVKTSSGTKVPLVK---KPVSSSGAGPSV--GKPPGR 173

Query: 178 VVKKPLNPMRTVKGAPSAIAV--NKRKREDGKPKVISXXXXXXXXXXXXXXXXXXXXXXP 235
           +V   LNP R VKGA S++ +  NKRKR+D KPK +S                      P
Sbjct: 174 LVTASLNPKRAVKGAASSVDLGNNKRKRQDEKPKKVSAEEKAALKAREAARKRVEDREKP 233

Query: 236 LMGLY 240
           L+GLY
Sbjct: 234 LLGLY 238



>AT3G54230.2 | chr3:20073872-20080142 FORWARD LENGTH=1009
          Length = 1008

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 92  SAAPGDGWEFDSTSGYYYDKSTGLYFDSNSGFYYSDGLGKWVTQEE 137
           ++AP  G+ +D  SGYYYD ++G Y+D NSG YY    G W + ++
Sbjct: 578 TSAPQSGYVWDEASGYYYDAASGYYYDGNSGLYYDSNSGLWYSYDQ 623



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.130    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,502,278
Number of extensions: 158035
Number of successful extensions: 283
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 147
Effective length of database: 8,474,633
Effective search space: 1245771051
Effective search space used: 1245771051
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)