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Os06g0209300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, FYVE/PHD-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0113) R2 : 0.675
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.823 (0.0271) R2dC : 0.661 R2C : 0.652
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.119 (0.0238) R2dN8 : 0.0231 R2N8 : 0.0135
σ : 0.213
deviance : 20.81
__
_____
C
peak time of C : 12.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.72 0.192 12.3 -0.234 0.51 -0.279 0.016 0.509 0.0812 13.6 2.244 40 -- --
16.91 0.192 12.3 -0.192 0.518 -0.267 -0.546 -- 0.0828 13.3 3.168 65 -- --
16.7 0.19 12.3 -0.23 0.501 -0.286 -- 0.491 0.0806 13.6 2.613 48 -- --
18.07 0.198 12.3 -0.221 0.495 -0.286 -- -- 0.0724 13.3 3.309 74 -- --
17.99 0.198 12.4 -0.241 -- -0.666 -- 0.51 0.0495 -- 4.08 118 -- --
18.41 0.201 12.3 -0.195 0.818 -- -0.53 -- 0.0979 12.9 -- -- -- --
19.6 0.207 12.3 -0.215 0.82 -- -- -- 0.0952 12.9 -- -- -- --
19.47 0.206 12.4 -0.241 -- -0.661 -- -- 0.0518 -- 3.973 118 -- --
19.36 0.205 12.3 -- 0.491 -0.293 -- -- 0.0988 13.3 4.158 79 -- --
61.45 0.366 12.3 -0.245 -- -- -- -- 0.0797 -- -- -- -- --
20.81 0.213 12.3 -- 0.823 -- -- -- 0.119 12.9 -- -- -- --
20.99 0.213 12.3 -- -- -0.661 -- -- 0.0789 -- 4.186 118 -- --
63.03 0.371 12.3 -- -- -- -- -- 0.107 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.87 radiation 1.0 30 < th dose dependent rect. 2 19
4 15.90 radiation 1.0 10 < th dose dependent rect. 2 21
7 15.94 radiation 1.0 10 < th dose independent rect. 2 21
8 15.95 radiation 1.0 30 < th dose independent rect. 2 19
27 16.20 radiation 40.0 30 < th dose independent rect. 5 21
52 16.34 radiation 40.0 270 < th dose independent rect. 20 13
55 16.34 atmosphere 995.0 30 > th dose dependent rect. 5 12
57 16.35 radiation 30.0 720 < th dose independent rect. 5 4
60 16.36 radiation 30.0 270 < th dose independent rect. 20 15
72 16.39 atmosphere 995.0 720 > th dose dependent rect. 5 3
79 16.42 radiation 40.0 10 < th dose independent rect. 7 19
84 16.44 temperature 30.0 270 < th dose independent rect. 20 13
85 16.44 radiation 1.0 90 < th dose independent rect. 15 14
89 16.45 temperature 15.0 270 > th dose independent rect. 9 11
90 16.45 radiation 40.0 10 < th dose independent rect. 10 16
92 16.46 wind 1.0 270 > th dose independent rect. 9 11
98 16.47 radiation 10.0 90 < th dose dependent rect. 15 14
102 16.49 precipitation 0.1 270 < th dose independent rect. 9 11
103 16.49 precipitation 0.1 270 < th dose dependent rect. 9 11
109 16.51 temperature 10.0 720 > th dose independent rect. 5 10
110 16.51 atmosphere 1015.0 720 < th dose independent rect. 5 10
112 16.51 atmosphere 1015.0 270 < th dose independent rect. 9 11
113 16.51 wind 9.0 270 < th dose independent rect. 20 13
114 16.51 temperature 10.0 270 > th dose independent rect. 20 13
115 16.51 humidity 50.0 270 > th dose independent rect. 20 13
116 16.51 atmosphere 995.0 270 > th dose independent rect. 20 13
117 16.51 radiation 30.0 270 < th dose independent rect. 15 13
118 16.51 temperature 10.0 720 > th dose independent rect. 15 14
129 16.54 temperature 10.0 720 > th dose independent rect. 17 10
130 16.54 radiation 30.0 720 < th dose independent rect. 17 10
133 16.54 temperature 10.0 720 > th dose independent rect. 3 14
137 16.56 temperature 30.0 30 < th dose independent rect. 17 12
138 16.56 humidity 60.0 90 > th dose independent rect. 17 12
140 16.56 precipitation 0.1 270 < th dose independent rect. 20 13
141 16.56 precipitation 0.1 270 < th dose dependent rect. 20 13
142 16.57 humidity 50.0 720 > th dose independent rect. 5 10
144 16.57 temperature 10.0 30 > th dose dependent rect. 2 3
145 16.57 radiation 10.0 10 < th dose dependent rect. 2 10
146 16.57 radiation 40.0 720 < th dose dependent rect. 17 10
148 16.57 radiation 40.0 270 < th dose dependent rect. 15 13
154 16.58 wind 9.0 270 < th dose independent rect. 9 11
167 16.60 atmosphere 995.0 720 > th dose independent rect. 17 10
173 16.60 atmosphere 995.0 30 > th dose dependent rect. 2 3
177 16.61 precipitation 0.1 720 < th dose independent rect. 24 5
183 16.61 radiation 1.0 10 < th dose dependent sin 0 NA
184 16.61 atmosphere 995.0 720 > th dose dependent rect. 5 1
185 16.61 precipitation 0.1 720 < th dose dependent rect. 24 5
186 16.61 radiation 10.0 10 < th dose dependent rect. 2 8
193 16.62 temperature 15.0 720 > th dose independent rect. 17 3
200 16.63 atmosphere 1000.0 720 > th dose independent rect. 5 3
201 16.63 precipitation 0.1 30 < th dose independent rect. 2 3
212 16.63 precipitation 0.1 30 < th dose dependent rect. 2 3
217 16.64 atmosphere 1000.0 270 > th dose independent rect. 4 11
222 16.64 temperature 15.0 720 > th dose independent rect. 9 20
223 16.64 precipitation 0.1 30 < th dose independent rect. 5 21
227 16.64 precipitation 0.1 30 < th dose dependent rect. 5 21
229 16.65 wind 7.0 30 < th dose independent rect. 2 3
230 16.65 temperature 15.0 270 > th dose independent rect. 24 13
232 16.65 atmosphere 995.0 720 > th dose independent rect. 17 19
238 16.66 temperature 10.0 30 > th dose independent rect. 2 3
240 16.66 temperature 30.0 30 < th dose independent rect. 2 3
241 16.66 humidity 50.0 30 > th dose independent rect. 2 3
244 16.66 atmosphere 995.0 30 > th dose independent rect. 2 3
245 16.66 atmosphere 1010.0 30 < th dose independent rect. 2 3
247 16.66 radiation 1.0 30 < th dose independent rect. 2 3
254 16.66 temperature 10.0 30 > th dose independent rect. 5 21
255 16.66 temperature 15.0 270 > th dose independent rect. 23 22
256 16.66 radiation 10.0 30 < th dose dependent rect. 2 3
260 16.66 radiation 1.0 720 < th dose dependent rect. 24 5
263 16.67 radiation 1.0 10 > th dose independent sin 0 NA
264 16.67 wind 3.0 30 < th dose independent rect. 2 3
279 16.68 wind 1.0 270 > th dose independent rect. 21 2
284 16.68 radiation 40.0 10 < th dose independent rect. 22 14
296 16.69 atmosphere 995.0 270 > th dose independent rect. 9 11
298 16.69 precipitation 0.1 720 < th dose independent rect. 24 14
299 16.69 precipitation 0.1 720 < th dose independent rect. 8 21
303 16.69 radiation 40.0 270 < th dose dependent rect. 20 13
304 16.69 precipitation 0.1 720 < th dose dependent rect. 24 14
308 16.69 radiation 10.0 90 < th dose dependent rect. 15 18
313 16.69 precipitation 0.1 720 < th dose dependent rect. 8 21
316 16.70 temperature 10.0 720 > th dose independent rect. 12 5
317 16.70 atmosphere 1015.0 720 < th dose independent rect. 12 5
318 16.70 atmosphere 1015.0 720 < th dose independent rect. 24 5
324 16.70 temperature 10.0 720 > th dose independent rect. 17 19
334 16.71 wind 9.0 720 < th dose independent rect. 24 5
335 16.71 temperature 10.0 720 > th dose independent rect. 24 5
336 16.71 temperature 30.0 720 < th dose independent rect. 24 5
337 16.71 humidity 50.0 720 > th dose independent rect. 24 5
340 16.71 atmosphere 995.0 720 > th dose independent rect. 24 5
341 16.71 radiation 20.0 720 < th dose independent rect. 24 5
344 16.71 temperature 15.0 90 > th dose independent rect. 11 10
345 16.71 wind 9.0 270 < th dose independent rect. 24 13
350 16.71 temperature 10.0 720 > th dose independent rect. 5 19
352 16.71 precipitation 0.1 720 < th dose independent rect. 24 20
353 16.71 wind 9.0 30 < th dose independent rect. 5 21
355 16.71 radiation 30.0 720 < th dose dependent rect. 24 5
364 16.71 precipitation 0.1 720 < th dose dependent rect. 24 20
378 16.72 atmosphere 995.0 720 > th dose independent rect. 17 3
386 16.72 wind 9.0 720 < th dose independent rect. 12 5
387 16.72 radiation 20.0 720 < th dose independent rect. 21 11
396 16.72 radiation 1.0 30 < th dose independent rect. 15 21
401 16.72 wind 9.0 30 < th dose dependent rect. 2 3
416 16.72 radiation 1.0 30 < th dose dependent rect. 15 21
420 16.73 temperature 15.0 720 > th dose independent rect. 8 4
421 16.73 radiation 1.0 720 < th dose independent rect. 24 5
423 16.73 wind 9.0 270 < th dose independent rect. 13 11
447 16.73 precipitation 0.1 270 < th dose independent rect. 23 22
451 16.73 humidity 50.0 10 > th dose dependent rect. 21 5
469 16.73 precipitation 0.1 270 < th dose dependent rect. 23 22
471 16.74 radiation 1.0 10 < th dose independent sin 0 NA
477 16.74 wind 9.0 720 < th dose independent rect. 17 10
478 16.74 atmosphere 1015.0 720 < th dose independent rect. 2 10
487 16.74 atmosphere 995.0 30 > th dose independent rect. 5 21
488 16.74 radiation 1.0 90 > th dose independent rect. 7 23
490 16.74 humidity 50.0 30 > th dose dependent rect. 2 3
502 16.75 humidity 50.0 720 > th dose independent rect. 14 1
504 16.75 precipitation 0.1 720 < th dose independent rect. 2 10
518 16.75 precipitation 0.1 720 < th dose dependent rect. 2 10
528 16.76 wind 1.0 720 > th dose independent rect. 17 3
529 16.76 wind 7.0 720 < th dose independent rect. 5 3
530 16.76 temperature 30.0 720 < th dose independent rect. 5 4
533 16.76 humidity 50.0 720 > th dose independent rect. 17 10
544 16.76 wind 9.0 720 < th dose independent rect. 17 19
545 16.76 humidity 50.0 720 > th dose independent rect. 17 19
561 16.76 radiation 40.0 270 < th dose dependent rect. 20 15
582 16.77 atmosphere 1015.0 720 < th dose independent rect. 17 3
583 16.77 radiation 30.0 720 < th dose independent rect. 17 3
586 16.77 temperature 10.0 270 > th dose independent rect. 13 11
589 16.77 atmosphere 995.0 270 > th dose independent rect. 24 13
590 16.77 precipitation 0.1 720 < th dose independent rect. 15 14
597 16.77 precipitation 0.1 720 < th dose independent rect. 17 19
602 16.77 temperature 10.0 720 > th dose independent rect. 20 21
612 16.77 precipitation 0.1 720 < th dose dependent rect. 15 14
627 16.77 precipitation 0.1 720 < th dose dependent rect. 17 19
634 16.78 radiation 1.0 30 > th dose independent no NA NA
635 16.78 radiation 1.0 30 < th dose independent no NA NA
636 16.78 atmosphere 1015.0 720 < th dose independent rect. 2 1
638 16.78 wind 1.0 90 > th dose independent rect. 2 3
641 16.78 temperature 10.0 720 > th dose independent rect. 5 3
644 16.78 humidity 50.0 720 > th dose independent rect. 5 3
647 16.78 atmosphere 1015.0 720 < th dose independent rect. 5 3
650 16.78 wind 9.0 10 < th dose independent rect. 14 12
652 16.78 atmosphere 1015.0 270 < th dose independent rect. 24 13
654 16.78 radiation 1.0 30 > th dose independent rect. 5 14
737 16.78 radiation 1.0 30 < th dose dependent no NA NA
760 16.79 radiation 1.0 720 > th dose independent rect. 8 4
762 16.79 precipitation 0.1 720 < th dose independent rect. 17 10
765 16.79 humidity 50.0 270 > th dose independent rect. 24 12
796 16.79 temperature 15.0 90 > th dose independent rect. 1 20
797 16.79 humidity 50.0 90 > th dose independent rect. 1 20
807 16.79 humidity 50.0 10 > th dose independent rect. 5 21
846 16.79 radiation 1.0 30 < th dose independent rect. 17 23
848 16.79 radiation 20.0 14400 < th dose dependent rect. 22 5
849 16.79 precipitation 0.1 720 < th dose dependent rect. 17 10
862 16.79 radiation 1.0 30 < th dose dependent rect. 17 23
863 16.80 wind 7.0 270 < th dose independent rect. 21 2
865 16.80 temperature 10.0 270 > th dose independent rect. 21 2
866 16.80 temperature 30.0 270 < th dose independent rect. 21 2
867 16.80 humidity 50.0 270 > th dose independent rect. 21 2
870 16.80 atmosphere 995.0 270 > th dose independent rect. 21 2
871 16.80 radiation 1.0 270 < th dose independent rect. 21 2
876 16.80 precipitation 0.1 270 < th dose independent rect. 21 2
879 16.80 precipitation 0.1 720 < th dose independent rect. 17 3
881 16.80 precipitation 0.1 720 < th dose independent rect. 5 10
904 16.80 radiation 1.0 270 < th dose dependent rect. 21 2
909 16.80 precipitation 0.1 270 < th dose dependent rect. 21 2
911 16.80 radiation 40.0 720 < th dose dependent rect. 5 3
912 16.80 precipitation 0.1 720 < th dose dependent rect. 17 3
916 16.80 precipitation 0.1 720 < th dose dependent rect. 5 10
933 16.81 radiation 10.0 720 < th dose independent rect. 5 1
935 16.81 temperature 25.0 720 < th dose independent rect. 7 4
936 16.81 wind 9.0 720 < th dose independent rect. 2 10
937 16.81 wind 9.0 720 < th dose independent rect. 5 10
939 16.81 wind 9.0 10 < th dose independent rect. 2 12
941 16.81 radiation 40.0 10 < th dose independent rect. 14 12
949 16.81 atmosphere 1015.0 30 < th dose independent rect. 5 21
963 16.81 radiation 40.0 720 < th dose dependent rect. 21 11
994 16.82 atmosphere 995.0 270 > th dose independent rect. 23 22