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Os06g0206100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Gb protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0103) R2 : 0.488
β1 : 0.766 (0.0376) R2dD : 0.483 R2D : 0.384
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.183 (0.0219) R2dN8 : 0.104 R2N8 : 0.00565
σ : 0.193
deviance : 17.04
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.76 0.174 12.2 0.765 0.182 0.309 0.197 -0.553 0.233 20.7 90.25 321 -- --
14.15 0.175 12.2 0.753 0.186 0.348 0.348 -- 0.23 20.3 91.67 321 -- --
13.83 0.173 12.2 0.765 0.175 0.311 -- -0.67 0.233 21 91.23 349 -- --
14.53 0.178 12.2 0.739 0.181 0.328 -- -- 0.227 20.8 91.74 334 -- --
15.41 0.183 12.2 0.778 -- 0.253 -- -0.688 0.221 -- 91.67 315 -- --
15.81 0.186 12.2 0.771 0.134 -- 0.177 -- 0.183 22.9 -- -- -- --
15.93 0.187 12.2 0.763 0.133 -- -- -- 0.182 23.3 -- -- -- --
16.07 0.187 12.2 0.747 -- 0.223 -- -- 0.211 -- 92 282 -- --
28.5 0.249 12.2 -- 0.228 0.417 -- -- 0.166 20.6 90 384 -- --
17.04 0.193 12.2 0.766 -- -- -- -- 0.183 -- -- -- -- --
31.27 0.262 12.2 -- 0.142 -- -- -- 0.0966 23.7 -- -- -- --
30.48 0.258 12.2 -- -- 0.231 -- -- 0.14 -- 90 384 -- --
32.53 0.266 12.2 -- -- -- -- -- 0.0978 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.36 wind 1.0 14400 > th dose independent rect. 2 2
2 13.43 wind 1.0 14400 < th dose independent rect. 2 2
5 13.72 wind 1.0 270 < th dose dependent rect. 22 1
6 13.73 wind 1.0 14400 < th dose dependent rect. 2 2
7 13.74 humidity 90.0 270 > th dose dependent rect. 4 22
10 13.77 wind 1.0 43200 < th dose independent rect. 22 10
11 13.79 wind 1.0 43200 < th dose independent rect. 17 15
15 13.83 humidity 90.0 270 > th dose dependent rect. 21 22
21 13.85 wind 1.0 43200 > th dose independent rect. 22 10
23 13.86 wind 1.0 270 < th dose independent rect. 22 1
28 13.86 humidity 90.0 270 > th dose dependent rect. 11 23
29 13.87 radiation 1.0 4320 > th dose independent rect. 17 2
40 13.87 humidity 90.0 270 > th dose dependent rect. 21 13
41 13.87 humidity 90.0 270 > th dose dependent rect. 14 20
52 13.88 humidity 90.0 270 > th dose dependent no NA NA
54 13.88 humidity 90.0 270 > th dose dependent rect. 16 18
55 13.88 humidity 90.0 270 > th dose dependent rect. 21 18
66 13.88 humidity 90.0 270 > th dose dependent rect. 16 23
97 13.90 wind 1.0 43200 > th dose independent rect. 17 15
123 13.92 wind 1.0 30 < th dose dependent rect. 21 5
161 13.95 humidity 90.0 270 > th dose dependent sin 7 NA
188 13.99 radiation 1.0 4320 < th dose independent rect. 17 2
208 14.00 wind 1.0 43200 < th dose dependent rect. 3 5
221 14.01 wind 1.0 43200 > th dose independent rect. 3 5
229 14.02 wind 1.0 43200 < th dose independent sin 10 NA
230 14.02 humidity 90.0 720 > th dose independent rect. 23 1
231 14.02 humidity 90.0 720 > th dose independent rect. 21 4
260 14.06 humidity 90.0 720 > th dose dependent rect. 8 17
270 14.07 humidity 90.0 720 > th dose independent rect. 4 21
287 14.09 wind 1.0 14400 < th dose independent rect. 18 5
293 14.09 humidity 90.0 720 > th dose dependent rect. 21 4
312 14.11 wind 1.0 43200 > th dose independent rect. 5 3
320 14.11 humidity 90.0 720 > th dose dependent sin 16 NA
321 14.11 humidity 90.0 720 > th dose dependent rect. 23 1
328 14.12 radiation 1.0 4320 > th dose independent sin 13 NA
339 14.12 humidity 90.0 720 > th dose dependent rect. 14 12
343 14.13 wind 7.0 1440 > th dose independent rect. 1 2
352 14.13 wind 7.0 1440 > th dose dependent rect. 1 2
362 14.14 wind 1.0 43200 < th dose independent rect. 3 5
371 14.14 radiation 1.0 4320 < th dose dependent rect. 4 3
377 14.14 wind 1.0 43200 < th dose dependent rect. 23 9
379 14.14 radiation 1.0 4320 < th dose dependent rect. 15 16
406 14.15 radiation 1.0 4320 < th dose dependent rect. 17 13
412 14.16 radiation 1.0 4320 < th dose independent sin 13 NA
487 14.20 humidity 90.0 720 > th dose independent sin 13 NA
509 14.20 humidity 90.0 720 > th dose independent rect. 11 20
513 14.20 radiation 1.0 4320 < th dose dependent sin 12 NA
514 14.20 wind 1.0 14400 < th dose dependent rect. 17 6
527 14.21 humidity 90.0 720 > th dose independent rect. 13 18
536 14.21 wind 7.0 1440 > th dose dependent rect. 2 6
565 14.22 humidity 90.0 270 > th dose dependent rect. 5 1
590 14.23 humidity 90.0 720 > th dose independent rect. 20 10
598 14.23 radiation 1.0 4320 > th dose independent rect. 17 23
634 14.24 humidity 90.0 270 > th dose independent rect. 21 13
643 14.24 humidity 90.0 720 > th dose independent rect. 19 21
682 14.25 humidity 90.0 720 > th dose independent rect. 17 14
683 14.25 humidity 90.0 720 > th dose independent rect. 11 15
684 14.25 humidity 90.0 720 > th dose independent rect. 9 16
688 14.25 humidity 90.0 720 > th dose independent rect. 7 18
697 14.25 radiation 1.0 4320 < th dose independent rect. 17 23
703 14.25 radiation 1.0 4320 < th dose dependent rect. 5 11
706 14.25 radiation 1.0 4320 < th dose dependent rect. 2 14
713 14.25 radiation 1.0 4320 < th dose dependent rect. 17 23
714 14.26 wind 1.0 43200 > th dose independent rect. 7 1
716 14.26 wind 7.0 4320 > th dose independent rect. 7 2
717 14.26 wind 1.0 43200 < th dose independent rect. 5 3
748 14.26 radiation 1.0 4320 < th dose dependent rect. 17 2
749 14.26 humidity 90.0 14400 > th dose dependent rect. 10 3
783 14.27 wind 7.0 4320 < th dose independent rect. 7 2
785 14.27 wind 1.0 14400 > th dose independent rect. 19 4
789 14.27 humidity 90.0 720 > th dose independent rect. 14 12
899 14.28 wind 1.0 14400 < th dose dependent rect. 10 14
924 14.29 humidity 90.0 720 > th dose independent no NA NA
926 14.29 precipitation 0.1 43200 > th dose independent rect. 1 1
928 14.29 humidity 90.0 14400 > th dose independent rect. 10 3
944 14.29 precipitation 0.1 43200 > th dose dependent rect. 1 1
980 14.30 wind 1.0 43200 > th dose independent sin 10 NA
982 14.30 precipitation 0.1 43200 < th dose independent rect. 1 1