BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0206100 Os06g0206100|AK121282
(854 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13990.1 | chr3:4625708-4630383 REVERSE LENGTH=849 202 8e-52
AT3G07660.1 | chr3:2445275-2450372 REVERSE LENGTH=842 96 8e-20
AT3G13222.1 | chr3:4251287-4254206 REVERSE LENGTH=568 72 2e-12
AT4G18150.1 | chr4:10050211-10053790 FORWARD LENGTH=759 69 1e-11
AT1G55820.1 | chr1:20864397-20867418 FORWARD LENGTH=576 64 4e-10
AT5G46380.1 | chr5:18813088-18815974 REVERSE LENGTH=608 63 7e-10
AT1G29370.1 | chr1:10278080-10283024 REVERSE LENGTH=832 63 8e-10
AT1G29350.1 | chr1:10268761-10273613 REVERSE LENGTH=832 63 8e-10
>AT3G13990.1 | chr3:4625708-4630383 REVERSE LENGTH=849
Length = 848
Score = 202 bits (513), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 152/243 (62%), Gaps = 18/243 (7%)
Query: 621 YPPVHMQHYPNFMPYRHHIYSPVYVPPMAMPNF---PTNIPYPSNGNNYLQMPGGGSHLA 677
YP VH+ H+PN MPYR + SPVYVP M MP + P +PSNGN+Y+ MPGGGSHL
Sbjct: 615 YPQVHVSHFPNLMPYRQFL-SPVYVPQMPMPGYSGNPAAYAHPSNGNSYVLMPGGGSHLG 673
Query: 678 AGGMKYGV-SQYKPVPAGSPSGYGNYTHPAGFTFSSPXXXXXXXXXXXXXXNRIKYKDNN 736
+ G+KYG+ QYKPVP G P+G+G Y +P G+ + P +R+ K N
Sbjct: 674 SNGVKYGIHQQYKPVPTGGPAGFGTYNNPNGYPTNPP--NVVGNATGLEDPSRMINKHGN 731
Query: 737 LYAPSPQVETSDIWIQTPREMPTLQCPPYFNLSGQATSGAFVPN-PGNASFNATAQSSHA 795
+Y P+PQ ETS+IW+Q PR++ +LQ PY+N++GQ+ GA++ + + SFN TAQSSH
Sbjct: 732 IYVPNPQAETSEIWMQNPRDLSSLQS-PYYNVAGQSPHGAYLSSHTAHQSFNPTAQSSHM 790
Query: 796 QFPGLYHAQQPSSIVSPHPMVHQQVQSAIGPNGGVGV--ATPAPQVGAYQQPQLGH--WR 851
QF GL+H QP ++ +PH M + N GVGV + P Q+G YQQ QLGH W
Sbjct: 791 QFQGLFHPSQPGTMANPHHM-----GPGLSGNVGVGVVPSPPPSQIGTYQQSQLGHPNWP 845
Query: 852 PGF 854
F
Sbjct: 846 SNF 848
Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 78/147 (53%), Gaps = 18/147 (12%)
Query: 1 MAGGGRAGTEKGAAAGRGQTAIQSTIQSIKEVVGGHSDADIYAALRECNMDPNETTQKLL 60
M G R +G + IQSIKEVV HSDADIY AL+E NMD NE +KL+
Sbjct: 1 MVTGSRTSGNRGVGL---DDEAKKMIQSIKEVVDSHSDADIYTALKEANMDANEAVEKLI 57
Query: 61 NQDPFHEVKRKRDKKRESAGQKTVPDASAQAEHNSQWTKPRTQRVENDQRRAYS------ 114
+QDPFHEVKRKRD+K+E + E+ + K RTQ N +R YS
Sbjct: 58 HQDPFHEVKRKRDRKKEDTVFVEPANIKKPLENVTSEVKVRTQPEHNVRRGGYSRNFFPR 117
Query: 115 ---------HGQASGPNREFRVVRDSR 132
A+G N+EFRVVRD+R
Sbjct: 118 NAAQRNASPRNPATGSNKEFRVVRDNR 144
>AT3G07660.1 | chr3:2445275-2450372 REVERSE LENGTH=842
Length = 841
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 125/413 (30%), Positives = 167/413 (40%), Gaps = 67/413 (16%)
Query: 26 IQSIKEVVGG-HSDADIYAALRECNMDPNETTQKLLNQDPFHEVKRKRDKKRESAGQKTV 84
IQ+IKE G +S+ +I A L ECNMDP+ET Q+LL QDPFHEVK+KRDK++E+ K
Sbjct: 18 IQNIKETTAGNYSEDEIIAMLHECNMDPDETAQRLLLQDPFHEVKKKRDKRKENINNKDS 77
Query: 85 PDASAQAEHNSQWTKPRTQRVENDQRRAYSHGQAS----GPNREFRVVRDSRHGVVENRP 140
+ SQW R R +S AS G F+ EN P
Sbjct: 78 AE--------SQWRSGGGGRGSRGGRMNFSSRHASNDVAGAKNSFK---------KENGP 120
Query: 141 ELGHKGSPNVKVSDRSVPVVQTGRNHPPATTSE-----GQITQGAKHSYNSDVHQVKRQA 195
+ +V D S Q + A S + T G K S +SDV Q
Sbjct: 121 K---------QVIDPSTSTSQEIKTKDIALVSSHSAVMDKSTVGPK-SGSSDVRQSSNLP 170
Query: 196 QGTAQKYVKPHLKNSQDEQHPPTSDPAHTRPNLKAAEGAVGSVRRHVGVVNVQRQPSGR- 254
G+ Q LK + D A + L AVGS H V P R
Sbjct: 171 AGSGQ------LKAGRSSVPSNNIDGAPSSVELSKNRVAVGSRVVHTEQKAVDSLPLPRP 224
Query: 255 SSSHLHVQSGGSHVNNQRGNFVPGGPSGRHFMSKNMQSVHRTALD--------SVHRGRS 306
SSS + S N + P G + V +TA++ S H +
Sbjct: 225 SSSEVRFTSS----NPKSEQTAPEQHIGESKSHTRSRGVGKTAVNDTYGSRPASSHSNST 280
Query: 307 GGRSFVASSSKYQQ--GPASNQKVTQPAKEWKPKSTKKSSNIDTDNNNGTDVITTSASNT 364
G R S++ Q GP Q+ KEWKPK + + T +
Sbjct: 281 GSRPSSNYSNRSHQTVGP---QRGAGSIKEWKPKPVVNHNTTQGSGASSTGETLAVPTEA 337
Query: 365 ENSNVLDENALCEKTS--QACIHEV----EHVIIPEHLRVPEYEQTGLRFGSF 411
+ +V D E TS Q + ++ +HVIIP H+ VPE E+T L FGSF
Sbjct: 338 SDKSVEDATPSAEATSRLQRQLEDLQIQRQHVIIPNHILVPEAERTKLSFGSF 390
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 103/240 (42%), Gaps = 44/240 (18%)
Query: 622 PPVHMQHYP-NFMPYRHHIYSPVYVPPMAMPNFPTNIPY---PSNGNNYLQMPGGGSHLA 677
P +HM HYP N++PY + +SP Y+PP M + +N Y P Y PG
Sbjct: 621 PGLHMSHYPPNYVPYGY--FSPFYLPPPTMHQYLSNGAYAQQPQASGVYPPPPG-----T 673
Query: 678 AGGMKYGVSQYKP-------VPAGSPSGYG-NY-THPAGFTFSSPXXXXXXXXXXXXXXN 728
A G KY + YKP G GYG Y + PAG+ +S N
Sbjct: 674 ATGGKYTLPHYKPGTNTGNMTHVGITGGYGPTYGSFPAGYNPTS--AASAGNSTSNEDLN 731
Query: 729 RIKYKDNNLYAPS-PQVETSDIWIQTP-REMPTLQCPPYFNLSGQATSGAFVPNPGNASF 786
++ K+NN Y+ + Q E +WI P R++P+ ++ L + P
Sbjct: 732 SLQLKENNGYSTTGQQSEALPVWITGPGRDVPS----SFYGLQHHGQHVTYAP------- 780
Query: 787 NATAQSSHAQFPGLYHAQQPSSIVSPHPMVHQQVQSAIGPNGGVGVATPAPQVGAYQQPQ 846
AQ+ H FPG+YH Q + H + QQ Q G + PAP V +QQPQ
Sbjct: 781 ---AQAGHVAFPGMYHPGQAVTATGVHHPLLQQSQGV----AGAEMVAPAPNV--FQQPQ 831
>AT3G13222.1 | chr3:4251287-4254206 REVERSE LENGTH=568
Length = 567
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
Query: 25 TIQSIKEVVGG-HSDADIYAALRECNMDPNETTQKLLNQDPFHEVKRKRDKKRE 77
TIQ+I+EV G HSD DI++ +EC DP+ETTQKLL D FHEV+ KR++K+E
Sbjct: 21 TIQNIREVTGKQHSDEDIFSVFKECFSDPHETTQKLLYLDTFHEVRSKRERKKE 74
>AT4G18150.1 | chr4:10050211-10053790 FORWARD LENGTH=759
Length = 758
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 16/99 (16%)
Query: 1 MAGGGRAGTEKGAAAGRGQTAIQSTIQSIKEVVGGHSDADIYAALRECNMDPNETTQKLL 60
M GGG G+ A G ++ + IQ +KE+V S+ +IYA L EC+M+P+E +LL
Sbjct: 1 MGGGG--GSVSNANGGVPASS-RKVIQDLKEIVEC-SELEIYAMLVECDMNPDEAVNRLL 56
Query: 61 NQDPFHEVKRKRDKKRESAGQKTVPDASAQAEHNSQWTK 99
+QD FHEVK KR+KK+E+ +H WT+
Sbjct: 57 SQDTFHEVKSKREKKKET------------KDHADSWTR 83
>AT1G55820.1 | chr1:20864397-20867418 FORWARD LENGTH=576
Length = 575
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 22 IQSTIQSIKEVVGG-HSDADIYAALRECNMDPNETTQKLLNQDPFHEVKRKRDKKRE 77
++ T+Q I+E G HSD DI+A ++ DP+ET QKLL D FHEV+ KR+KK+E
Sbjct: 17 LRKTLQKIREYTGKQHSDEDIFAVYKDSFNDPHETAQKLLFLDTFHEVRSKREKKKE 73
>AT5G46380.1 | chr5:18813088-18815974 REVERSE LENGTH=608
Length = 607
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 23 QSTIQSIKEVVGGHSDADIYAALRECNMDPNETTQKLLNQDPFHEVKRKRDKKRES 78
++ ++S+KE+V S+ +IYA L ECNM+ +E +LL+QD F EVK KRDKK+E+
Sbjct: 16 RAIVRSMKEIVNC-SEQEIYAMLVECNMNADEAITRLLSQDSFQEVKSKRDKKKEA 70
>AT1G29370.1 | chr1:10278080-10283024 REVERSE LENGTH=832
Length = 831
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 7/66 (10%)
Query: 1 MAGGGRAGTEKGAAAGRGQTAIQSTIQSIKEVVGGHSDADIYAALRECNMDPNETTQKLL 60
+ GG R G + + R +QS+ E+V +A+IYA L+ECNMDPNET +LL
Sbjct: 6 VGGGARKGIQDIPSGSR------KIVQSLTEIVNS-PEAEIYAMLKECNMDPNETVSRLL 58
Query: 61 NQDPFH 66
+QDPFH
Sbjct: 59 SQDPFH 64
>AT1G29350.1 | chr1:10268761-10273613 REVERSE LENGTH=832
Length = 831
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 7/66 (10%)
Query: 1 MAGGGRAGTEKGAAAGRGQTAIQSTIQSIKEVVGGHSDADIYAALRECNMDPNETTQKLL 60
+ GG R G + + R +QS+ E+V +A+IYA L+ECNMDPNET +LL
Sbjct: 6 VGGGARKGIQDIPSGSR------KIVQSLTEIVNS-PEAEIYAMLKECNMDPNETVSRLL 58
Query: 61 NQDPFH 66
+QDPFH
Sbjct: 59 SQDPFH 64
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.127 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 19,102,489
Number of extensions: 858140
Number of successful extensions: 2266
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2252
Number of HSP's successfully gapped: 11
Length of query: 854
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 747
Effective length of database: 8,173,057
Effective search space: 6105273579
Effective search space used: 6105273579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 116 (49.3 bits)