Os06g0198800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Longin domain containing protein.
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Os06g0198800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Longin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.36 | 0.246 | 10.5 | -0.483 | 0.381 | 0.421 | -0.131 | -0.808 | -0.13 | 3.53 | 19.49 | 2001 | -- | -- |
| 27.96 | 0.246 | 10.5 | -0.423 | 0.362 | 0.618 | -0.0821 | -- | -0.12 | 3.31 | 19.2 | 2817 | -- | -- |
| 27.4 | 0.244 | 10.5 | -0.481 | 0.378 | 0.417 | -- | -0.789 | -0.13 | 3.49 | 19.47 | 2038 | -- | -- |
| 27.98 | 0.246 | 10.5 | -0.424 | 0.361 | 0.631 | -- | -- | -0.118 | 3.29 | 19.1 | 2826 | -- | -- |
| 34.46 | 0.273 | 10.5 | -0.505 | -- | 0.527 | -- | -0.638 | -0.137 | -- | 19.19 | 2584 | -- | -- |
| 34.21 | 0.274 | 10.5 | -0.119 | 0.386 | -- | -0.137 | -- | 0.00758 | 3.37 | -- | -- | -- | -- |
| 34.26 | 0.274 | 10.5 | -0.117 | 0.385 | -- | -- | -- | 0.00842 | 3.31 | -- | -- | -- | -- |
| 34.77 | 0.275 | 10.5 | -0.444 | -- | 0.754 | -- | -- | -0.119 | -- | 18.43 | 2650 | -- | -- |
| 31.43 | 0.263 | 10.5 | -- | 0.432 | 0.317 | -- | -- | -0.0132 | 2.98 | 19.1 | 2826 | -- | -- |
| 42.63 | 0.305 | 10.5 | -0.1 | -- | -- | -- | -- | 0.0186 | -- | -- | -- | -- | -- |
| 34.62 | 0.275 | 10.5 | -- | 0.383 | -- | -- | -- | 0.0214 | 3.31 | -- | -- | -- | -- |
| 38.28 | 0.288 | 10.5 | -- | -- | 0.582 | -- | -- | -0.0276 | -- | 17.9 | 2581 | -- | -- |
| 42.89 | 0.306 | 10.5 | -- | -- | -- | -- | -- | 0.0297 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.00 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 19 |
| 5 | 26.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 7 | 26.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 13 | 26.75 | temperature | 20 | 30 | > th | dose independent | rect. | 12 | 23 |
| 17 | 26.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 20 | 26.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 27 | 26.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 37 | 26.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 41 | 26.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 49 | 26.96 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 71 | 27.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 80 | 27.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 5 |
| 88 | 27.06 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 95 | 27.07 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 113 | 27.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 120 | 27.10 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 126 | 27.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 5 |
| 154 | 27.16 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 211 | 27.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 215 | 27.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 216 | 27.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 230 | 27.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 17 |
| 243 | 27.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 17 |
| 281 | 27.35 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 317 | 27.38 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 354 | 27.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 364 | 27.42 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 473 | 27.51 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 485 | 27.52 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 16 | 10 |
| 495 | 27.52 | temperature | 15 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 518 | 27.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 552 | 27.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 592 | 27.59 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 604 | 27.59 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 669 | 27.62 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 767 | 27.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 787 | 27.69 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 816 | 27.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 845 | 27.73 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 847 | 27.73 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 928 | 27.76 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 931 | 27.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 2 |