BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0198800 Os06g0198800|AK064781
         (68 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11890.1  | chr1:4011509-4012835 FORWARD LENGTH=219            110   1e-25
AT5G52270.1  | chr5:21221643-21222600 REVERSE LENGTH=215           54   1e-08

>AT1G11890.1 | chr1:4011509-4012835 FORWARD LENGTH=219
          Length = 218

 Score =  110 bits (276), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/54 (92%), Positives = 52/54 (96%)

Query: 8   YIIEGRVCYLTMCDRSYPKKLAFQYLEDLRNEFERVNGSQIETAARPYAFIKFE 61
           YIIEGRVCYLTMCDRSYPKKLAFQYLEDL+NEFERVNG  IETAARPYAFIKF+
Sbjct: 64  YIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGPNIETAARPYAFIKFD 117



>AT5G52270.1 | chr5:21221643-21222600 REVERSE LENGTH=215
          Length = 214

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 8   YIIEGRVCYLTMCDRSYPKKLAFQYLEDLRNEFERVN-GSQIETAARPYAFIKF 60
           +++E ++CY+ + D SYP+KL F YL++L  E ++++  + I+  ++PY+FI+F
Sbjct: 66  FLVEKKICYIALSDSSYPRKLLFNYLQNLNKELDKLDEKALIQKISKPYSFIRF 119



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.142    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,339,557
Number of extensions: 40973
Number of successful extensions: 111
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 68
Length of database: 11,106,569
Length adjustment: 40
Effective length of query: 28
Effective length of database: 10,009,929
Effective search space: 280278012
Effective search space used: 280278012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)