Os06g0195900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NOG, C-terminal domain containing protein.
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Os06g0195900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NOG, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.17 | 0.352 | 11.3 | 1.49 | 0.168 | 1.47 | 0.136 | 1.22 | 0.757 | 0.413 | 20.5 | 2962 | -- | -- |
| 56.82 | 0.351 | 11.3 | 1.4 | 0.14 | 1.13 | 0.115 | -- | 0.702 | 0.332 | 21.79 | 2880 | -- | -- |
| 56.25 | 0.349 | 11.3 | 1.48 | 0.168 | 1.47 | -- | 1.22 | 0.756 | 0.533 | 20.51 | 2960 | -- | -- |
| 56.87 | 0.351 | 11.3 | 1.38 | 0.15 | 1.14 | -- | -- | 0.683 | 0.418 | 21.7 | 2882 | -- | -- |
| 56.39 | 0.35 | 11.3 | 1.64 | -- | 1.32 | -- | 1.17 | 0.767 | -- | 21.4 | 2831 | -- | -- |
| 94.08 | 0.455 | 11.2 | 1.97 | 0.198 | -- | 0.0957 | -- | 1.06 | 0.955 | -- | -- | -- | -- |
| 94.11 | 0.454 | 11.2 | 1.97 | 0.199 | -- | -- | -- | 1.06 | 1.08 | -- | -- | -- | -- |
| 58.21 | 0.355 | 11.3 | 1.46 | -- | 1.08 | -- | -- | 0.682 | -- | 22.1 | 2732 | -- | -- |
| 66.38 | 0.379 | 11.4 | -- | 0.164 | 1.76 | -- | -- | 0.373 | 1.06 | 19.17 | 47520 | -- | -- |
| 96.56 | 0.459 | 11.2 | 1.98 | -- | -- | -- | -- | 1.06 | -- | -- | -- | -- | -- |
| 196.2 | 0.655 | 11.3 | -- | 0.232 | -- | -- | -- | 0.839 | 1.42 | -- | -- | -- | -- |
| 68.05 | 0.384 | 11.4 | -- | -- | 1.77 | -- | -- | 0.373 | -- | 19.13 | 47520 | -- | -- |
| 199.52 | 0.659 | 11.3 | -- | -- | -- | -- | -- | 0.842 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.72 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 15 | 56.36 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 16 | 56.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 17 |
| 18 | 56.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 13 |
| 21 | 56.40 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 32 | 56.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 11 |
| 49 | 56.48 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 107 | 56.67 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 12 |
| 150 | 56.83 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 226 | 57.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 7 |
| 324 | 57.36 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 22 |
| 359 | 57.45 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 411 | 57.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 23 |
| 442 | 57.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 676 | 58.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 737 | 58.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 877 | 58.39 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 1000 | 58.59 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 21 |