BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0195900 Os06g0195900|AK101986
(277 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G50920.1 | chr1:18870555-18872570 FORWARD LENGTH=672 216 9e-57
AT1G10300.1 | chr1:3378142-3380226 FORWARD LENGTH=688 201 4e-52
>AT1G50920.1 | chr1:18870555-18872570 FORWARD LENGTH=672
Length = 671
Score = 216 bits (550), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 122/262 (46%), Positives = 147/262 (56%), Gaps = 10/262 (3%)
Query: 22 ENGGAGVYSASLKKHYLLADDEWKEDILPEILDGHNVADFLDPDILXXXXXXXXXXXXXX 81
ENGGAGVYSASLKK+Y+L DEWKEDI+PEILDGHNVADF+DPDIL
Sbjct: 414 ENGGAGVYSASLKKNYILQHDEWKEDIMPEILDGHNVADFIDPDIL-QRLAELEREEGIR 472
Query: 82 XXXXXXXXXXIDGHELTEEQREILGQIRKKKALLIQEHRMKKRTAESRPIVPRKFDKDRT 141
+D +L++EQ + L +IRKKKA+LI+ HR+KK A++R VPRKFDKD+
Sbjct: 473 EAGVEEADMEMDIEKLSDEQLKQLSEIRKKKAILIKNHRLKKTVAQNRSTVPRKFDKDKK 532
Query: 142 FTTNRMGRQLSSMGFDPXXXXXXXXXXXXXXXXXXXXXXXASDGDDMDIDGQQXXXXXXX 201
+TT RMGR+LS+MG DP + D MD+D +Q
Sbjct: 533 YTTKRMGRELSAMGLDPSSAMDRARSKSRGRKRDRSED---AGNDAMDVDDEQQSNKKQR 589
Query: 202 XXXXXXXXXXX------PPEEVVPGEGFXXXXXXXXXXXXXXXXVRNRNKEARRGEADRV 255
P EVVPGEGF + R+K ARRGEADRV
Sbjct: 590 VRSKSRAMSISRSQSRPPAHEVVPGEGFKDSTQKLSAIKISNKSHKKRDKNARRGEADRV 649
Query: 256 IPTLKPKHLFSGKRSIGKTSRR 277
IPTL+PKHLFSGKR GKT RR
Sbjct: 650 IPTLRPKHLFSGKRGKGKTDRR 671
>AT1G10300.1 | chr1:3378142-3380226 FORWARD LENGTH=688
Length = 687
Score = 201 bits (511), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/263 (45%), Positives = 146/263 (55%), Gaps = 8/263 (3%)
Query: 21 NENGGAGVYSASLKKHYLLADDEWKEDILPEILDGHNVADFLDPDILXXXXXXXXXXXXX 80
+ENGGAGVYSASLKK+Y+LA +EWK+DI+PEI D HNVADF+D DIL
Sbjct: 427 DENGGAGVYSASLKKNYILAKEEWKDDIIPEICDCHNVADFVDSDILNRLEELTSEESLR 486
Query: 81 XXXXXXXXXXXIDGHELTEEQREILGQIRKKKALLIQEHRMKKRTAESRPIVPRKFDKDR 140
+G ELTE+++ L IRKKKALLI+E R+KK A++R VPRKFDKD+
Sbjct: 487 KAEEEEVGFEI-EGEELTEKEKNDLAAIRKKKALLIEESRLKKSNAQNRAAVPRKFDKDK 545
Query: 141 TFTTNRMGRQLSSMGFDPXXXXXXXXXXXXXXXXXXXXXXXASDGDDMDID------GQQ 194
FT RMGR+LSS+G DP ++D D+D++ ++
Sbjct: 546 KFTRKRMGRELSSLGLDP-SSALNRARSKSRGRKRERYDDLSNDAMDVDVNDDEQHKKKK 604
Query: 195 XXXXXXXXXXXXXXXXXXPPEEVVPGEGFXXXXXXXXXXXXXXXXVRNRNKEARRGEADR 254
PP EVVPGEGF R R+K ARRGEADR
Sbjct: 605 MCLRSKSRSLSRSRSVSRPPHEVVPGEGFKDSSQKIKAIKIGHKSHRKRDKAARRGEADR 664
Query: 255 VIPTLKPKHLFSGKRSIGKTSRR 277
VIP+LKPKHLFSGKR GK RR
Sbjct: 665 VIPSLKPKHLFSGKRGNGKNQRR 687
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,131,162
Number of extensions: 123863
Number of successful extensions: 201
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 4
Length of query: 277
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 180
Effective length of database: 8,447,217
Effective search space: 1520499060
Effective search space used: 1520499060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)