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Os06g0191900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.82 (0.0645) R2 : 0.336
β1 : -0.439 (0.221) R2dD : 0.0132 R2D : -0.346
β2 : -- (--) R2dC : -- R2C : --
β3 : -22.4 (2.1) R2dE : 8.01 R2E : -6.29
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -46.7 (4.75) R2dD*E : 6.46 R2D*E : -7.38
γ1 : -0.218 (0.0891) R2dN8 : 0.0124 R2N8 : -0.295
σ : 0.758
deviance : 265.18
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C
peak time of C : --
E
wheather : radiation
threshold : 0.7659
memory length : 1638
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.82
open length of G : 4.91

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
252.38 0.746 8.82 -0.396 0.421 -22.5 0.677 -46.7 -0.212 12.7 0.8878 1628 7.85 4.92
327.98 0.85 9.28 1.41 0.418 -1.39 0.66 -- -0.022 12.7 0.8878 1628 7.85 4.92
253.85 0.742 8.82 -0.424 0.437 -22.5 -- -46.7 -0.224 12.9 0.7705 1648 7.82 4.92
288.07 0.79 9.34 1.11 0.441 -1.19 -- -- -0.292 13.6 13.16 1355 8.02 5.68
265.18 0.758 8.82 -0.439 -- -22.4 -- -46.7 -0.218 -- 0.7659 1638 7.82 4.91
329.89 0.851 9.28 1.42 0.407 -- 0.709 -- -0.0164 12.7 -- -- -- --
331.92 0.853 9.28 1.45 0.41 -- -- -- -0.0118 13.1 -- -- -- --
292.66 0.797 9.35 1.13 -- -1.26 -- -- -0.296 -- 13.63 1313 8.08 6.63
319.85 0.833 9.34 -- 0.471 -1.24 -- -- -0.359 13.3 14.65 1340 8.01 6.69
342.33 0.865 9.28 1.43 -- -- -- -- -0.02 -- -- -- -- --
387.27 0.921 9.31 -- 0.386 -- -- -- -0.173 13 -- -- -- --
324.78 0.839 9.4 -- -- -1.57 -- -- -0.461 -- 14.76 1311 8.07 6.65
396.54 0.929 9.32 -- -- -- -- -- -0.179 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 254.04 radiation 1 1440 > th dose independent rect. 8 4
2 256.23 radiation 1 1440 < th dose independent rect. 8 5
3 256.23 radiation 1 1440 < th dose dependent rect. 8 5
7 259.14 radiation 1 1440 > th dose independent rect. 11 1
17 260.61 radiation 1 1440 < th dose dependent rect. 11 5
23 261.15 radiation 1 1440 < th dose independent rect. 11 2
24 261.15 radiation 1 1440 < th dose dependent rect. 11 2
43 262.14 wind 1 43200 > th dose independent rect. 16 1
44 262.16 humidity 80 43200 > th dose dependent rect. 20 6
46 262.29 radiation 40 14400 > th dose independent rect. 15 1
64 262.59 radiation 1 1440 < th dose independent rect. 9 1
65 262.59 radiation 1 1440 < th dose dependent rect. 9 1
67 262.78 radiation 1 1440 > th dose independent rect. 9 1
68 262.89 wind 9 43200 > th dose independent rect. 13 5
70 262.91 radiation 1 1440 > th dose independent rect. 13 1
71 262.94 humidity 80 43200 > th dose dependent rect. 21 4
77 263.11 wind 1 43200 < th dose independent rect. 16 1
94 263.29 wind 9 43200 > th dose independent rect. 11 10
96 263.36 humidity 80 43200 > th dose dependent rect. 18 11
105 263.61 wind 9 43200 > th dose dependent rect. 11 10
115 263.87 humidity 80 43200 > th dose dependent rect. 22 2
116 263.97 radiation 1 14400 < th dose dependent rect. 9 1
119 264.06 wind 9 43200 < th dose independent rect. 13 5
122 264.08 wind 9 43200 > th dose dependent rect. 13 6
125 264.16 radiation 40 14400 > th dose dependent rect. 15 1
145 264.33 humidity 90 43200 < th dose independent rect. 23 6
151 264.58 wind 9 43200 < th dose independent rect. 11 9
165 264.88 humidity 90 43200 < th dose independent rect. 24 1
168 264.95 wind 7 43200 > th dose dependent rect. 13 1
182 265.38 radiation 10 43200 < th dose dependent rect. 19 10
184 265.42 wind 1 43200 < th dose dependent rect. 16 1
189 265.46 wind 9 43200 > th dose independent rect. 14 1
192 265.48 radiation 10 4320 < th dose dependent rect. 4 1
194 265.53 temperature 25 1440 > th dose dependent rect. 15 1
203 265.76 radiation 10 43200 < th dose dependent rect. 24 5
219 265.98 radiation 10 43200 < th dose dependent rect. 4 1
225 266.23 radiation 1 14400 > th dose independent rect. 8 2
254 266.46 wind 9 43200 > th dose independent rect. 12 3
264 266.57 wind 9 43200 > th dose dependent rect. 11 4
270 266.67 temperature 20 90 > th dose independent rect. 21 9
279 266.78 wind 9 43200 < th dose independent rect. 11 4
283 266.80 radiation 1 43200 > th dose independent rect. 4 1
293 266.80 radiation 1 43200 > th dose dependent rect. 4 1
309 266.95 radiation 1 43200 < th dose independent rect. 19 10
316 267.05 radiation 1 43200 < th dose independent rect. 4 1
317 267.06 humidity 80 43200 > th dose dependent sin 12 NA
323 267.15 radiation 1 43200 < th dose independent rect. 24 5
324 267.16 radiation 1 14400 < th dose independent rect. 8 2
348 267.42 humidity 80 1440 > th dose independent rect. 12 2
367 267.67 wind 7 43200 < th dose independent rect. 13 1
378 267.80 radiation 20 1440 < th dose dependent rect. 11 2
384 267.88 humidity 80 14400 < th dose dependent rect. 16 1
387 267.92 wind 7 43200 < th dose independent rect. 17 1
396 268.12 temperature 20 270 > th dose independent rect. 21 7
397 268.12 radiation 10 4320 < th dose dependent rect. 19 10
405 268.26 radiation 20 43200 < th dose independent rect. 6 1
414 268.36 radiation 20 43200 < th dose independent rect. 18 13
423 268.45 radiation 20 14400 < th dose independent rect. 17 8
456 268.89 humidity 50 14400 > th dose dependent rect. 16 2
466 269.04 radiation 20 14400 < th dose independent rect. 17 3
472 269.12 humidity 80 1440 > th dose dependent rect. 12 2
473 269.12 radiation 40 14400 < th dose dependent rect. 18 7
487 269.28 radiation 40 14400 < th dose dependent rect. 18 4
491 269.32 radiation 20 14400 < th dose independent rect. 17 5
492 269.36 humidity 80 14400 > th dose independent rect. 17 1
500 269.43 humidity 80 14400 < th dose independent rect. 17 1
505 269.49 temperature 20 90 < th dose independent rect. 16 16
535 269.74 humidity 90 43200 > th dose independent rect. 1 4
562 270.02 humidity 90 43200 > th dose independent rect. 23 6
604 270.35 radiation 1 1440 > th dose independent rect. 4 1
614 270.35 radiation 1 1440 > th dose dependent rect. 4 1
642 270.59 humidity 50 14400 > th dose dependent rect. 6 1
653 270.66 humidity 90 14400 < th dose dependent rect. 5 2
674 270.83 radiation 30 43200 > th dose dependent rect. 7 1
697 270.90 humidity 90 43200 > th dose independent rect. 4 1
700 270.92 humidity 90 43200 > th dose independent rect. 1 2
708 270.98 humidity 70 14400 > th dose independent rect. 21 1
735 271.37 humidity 90 14400 < th dose dependent rect. 16 7
771 271.51 temperature 25 1440 > th dose dependent sin 21 NA
780 271.57 radiation 40 43200 < th dose independent rect. 7 1
787 271.59 radiation 40 43200 < th dose independent rect. 17 15
798 271.67 temperature 15 43200 > th dose independent rect. 23 1
814 271.75 humidity 50 14400 > th dose dependent rect. 16 7
845 271.91 radiation 40 43200 < th dose independent rect. 24 8
855 271.98 humidity 70 14400 < th dose dependent rect. 21 1
867 272.00 wind 9 43200 > th dose independent rect. 11 14
881 272.07 radiation 1 43200 > th dose dependent rect. 18 12
907 272.20 temperature 15 43200 > th dose independent rect. 2 3
930 272.29 temperature 15 43200 > th dose independent rect. 23 6
933 272.30 humidity 70 14400 > th dose independent rect. 21 4
941 272.32 temperature 15 14400 < th dose dependent rect. 4 1
945 272.33 temperature 25 1440 > th dose dependent rect. 13 19
965 272.39 temperature 15 43200 > th dose independent rect. 2 1
968 272.40 wind 7 43200 > th dose independent rect. 17 1
974 272.41 temperature 15 43200 < th dose independent rect. 2 1
976 272.42 humidity 80 1440 < th dose independent rect. 12 2
990 272.48 temperature 15 43200 < th dose independent rect. 23 1
993 272.48 humidity 70 43200 > th dose dependent rect. 22 18