BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0191900 Os06g0191900|J023028N02
(71 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G31230.1 | chr4:15173071-15176109 REVERSE LENGTH=765 65 1e-11
AT2G24370.1 | chr2:10369979-10373063 REVERSE LENGTH=789 58 9e-10
AT1G78940.2 | chr1:29680854-29683985 REVERSE LENGTH=755 53 3e-08
AT3G20200.1 | chr3:7047895-7051145 FORWARD LENGTH=781 53 4e-08
AT2G07020.1 | chr2:2908473-2911198 REVERSE LENGTH=701 52 6e-08
AT1G16760.1 | chr1:5734234-5737307 FORWARD LENGTH=759 50 2e-07
AT5G35380.1 | chr5:13593429-13596293 REVERSE LENGTH=732 49 4e-07
AT1G17540.1 | chr1:6029551-6032641 REVERSE LENGTH=729 48 1e-06
AT1G72760.1 | chr1:27385421-27388274 REVERSE LENGTH=698 48 1e-06
>AT4G31230.1 | chr4:15173071-15176109 REVERSE LENGTH=765
Length = 764
Score = 64.7 bits (156), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/41 (68%), Positives = 34/41 (82%)
Query: 17 LVAVCIDKDKNSQNALKWAIDTLVQKGQIIVLVHVNTKGTS 57
LVAV ID+DKNSQ ALKWA+D L+QKGQ +VLVHV + +S
Sbjct: 17 LVAVAIDRDKNSQGALKWAVDNLLQKGQTVVLVHVKPRASS 57
>AT2G24370.1 | chr2:10369979-10373063 REVERSE LENGTH=789
Length = 788
Score = 58.2 bits (139), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/41 (60%), Positives = 34/41 (82%)
Query: 14 SYPLVAVCIDKDKNSQNALKWAIDTLVQKGQIIVLVHVNTK 54
S +VAV IDKDK+SQ+ALKWA+D L+Q+GQ ++LVHV +
Sbjct: 16 SSGVVAVAIDKDKSSQHALKWAVDNLLQRGQSVILVHVKLR 56
>AT1G78940.2 | chr1:29680854-29683985 REVERSE LENGTH=755
Length = 754
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 29/44 (65%)
Query: 18 VAVCIDKDKNSQNALKWAIDTLVQKGQIIVLVHVNTKGTSGKSL 61
VAV IDKDK SQ+ALKW ID L +GQ I L+HV + S L
Sbjct: 18 VAVAIDKDKGSQHALKWTIDNLASRGQTISLIHVLCRSHSSSDL 61
>AT3G20200.1 | chr3:7047895-7051145 FORWARD LENGTH=781
Length = 780
Score = 52.8 bits (125), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/41 (58%), Positives = 31/41 (75%)
Query: 17 LVAVCIDKDKNSQNALKWAIDTLVQKGQIIVLVHVNTKGTS 57
LVAV +D +K SQ+ALKWA D LV KGQ I+L+HV + +S
Sbjct: 17 LVAVAVDNNKGSQHALKWAADHLVSKGQTIILLHVILRSSS 57
>AT2G07020.1 | chr2:2908473-2911198 REVERSE LENGTH=701
Length = 700
Score = 52.0 bits (123), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 1 MERYHDGKDLDTSSYPLVAVCIDKDKNSQNALKWAIDTLVQKGQIIVLVHVNTKGT 56
M + DG+ D S VA+ ID+DK SQ ALKWA+D L+ G+ + L+HV K T
Sbjct: 1 MVKMVDGERRDES----VAIAIDRDKGSQAALKWAVDNLLTPGETLTLIHVKVKQT 52
>AT1G16760.1 | chr1:5734234-5737307 FORWARD LENGTH=759
Length = 758
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 18 VAVCIDKDKNSQNALKWAIDTLVQKGQIIVLVHVNTKGTS 57
VA+ IDKDK+SQNA+KW ++ L +GQ + L+HV K S
Sbjct: 18 VAIAIDKDKSSQNAIKWTLENLATRGQTLALIHVLPKSQS 57
>AT5G35380.1 | chr5:13593429-13596293 REVERSE LENGTH=732
Length = 731
Score = 49.3 bits (116), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 18 VAVCIDKDKNSQNALKWAIDTLVQKGQIIVLVHVNTKGTSGKSLRY 63
+ + ID+DK SQNALKWA+ L+ +GQ + L+HV K S SL Y
Sbjct: 12 ITLAIDRDKESQNALKWAVSNLLSRGQTLTLLHVKLKQPS--SLPY 55
>AT1G17540.1 | chr1:6029551-6032641 REVERSE LENGTH=729
Length = 728
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 3 RYHDGKDLDTSSYPLVAVCIDKDKNSQNALKWAIDTLVQKGQIIVLVHVNTK 54
R GKD S + A+ IDKDKNSQ+ALKWA++ ++ +L+HV TK
Sbjct: 4 RRLKGKD----SKAVTAIAIDKDKNSQHALKWAVENIIIDSPNCILLHVQTK 51
>AT1G72760.1 | chr1:27385421-27388274 REVERSE LENGTH=698
Length = 697
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 17 LVAVCIDKDKNSQNALKWAIDTLVQKGQIIVLVHVNTKGTSG 58
+ A+ IDKDKNSQ+ALKWA++ +V VL+HV T G
Sbjct: 16 ITAIAIDKDKNSQHALKWAVENIVADAPQCVLIHVQLGDTGG 57
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,541,992
Number of extensions: 47147
Number of successful extensions: 150
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 9
Length of query: 71
Length of database: 11,106,569
Length adjustment: 43
Effective length of query: 28
Effective length of database: 9,927,681
Effective search space: 277975068
Effective search space used: 277975068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)