Os06g0183900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF602 family protein.
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Os06g0183900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF602 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.34 | 0.196 | 12.8 | 0.19 | 0.343 | 0.369 | -0.213 | -0.896 | -0.0218 | 7.63 | 26.7 | 14 | -- | -- |
| 17.52 | 0.196 | 12.8 | 0.265 | 0.342 | 0.28 | -0.208 | -- | -0.00858 | 7.71 | 26.3 | 18 | -- | -- |
| 17.46 | 0.195 | 12.8 | 0.19 | 0.346 | 0.373 | -- | -0.859 | -0.0208 | 7.66 | 26.64 | 18 | -- | -- |
| 17.64 | 0.196 | 12.8 | 0.259 | 0.346 | 0.284 | -- | -- | -0.00822 | 7.76 | 26.3 | 18 | -- | -- |
| 23.6 | 0.228 | 12.8 | 0.182 | -- | 0.315 | -- | -1.08 | -0.0186 | -- | 26.7 | 11 | -- | -- |
| 18.71 | 0.203 | 12.8 | 0.304 | 0.329 | -- | -0.165 | -- | 0.00053 | 8.71 | -- | -- | -- | -- |
| 18.8 | 0.203 | 12.8 | 0.298 | 0.329 | -- | -- | -- | 0.000711 | 8.8 | -- | -- | -- | -- |
| 23.89 | 0.229 | 12.8 | 0.271 | -- | 0.224 | -- | -- | -0.00202 | -- | 26.3 | 14 | -- | -- |
| 19.34 | 0.205 | 12.8 | -- | 0.359 | 0.342 | -- | -- | -0.0448 | 7.41 | 25.73 | 18 | -- | -- |
| 24.93 | 0.233 | 12.8 | 0.299 | -- | -- | -- | -- | 0.00321 | -- | -- | -- | -- | -- |
| 21.15 | 0.215 | 12.8 | -- | 0.329 | -- | -- | -- | -0.0325 | 8.73 | -- | -- | -- | -- |
| 25.59 | 0.236 | 12.9 | -- | -- | 0.334 | -- | -- | -0.0679 | -- | 13.32 | 2 | -- | -- |
| 27.29 | 0.244 | 12.8 | -- | -- | -- | -- | -- | -0.0299 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.65 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 18 | 14 |
| 5 | 16.79 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 6 | 16.85 | temperature | 25.0 | 270 | > th | dose independent | rect. | 24 | 14 |
| 11 | 16.92 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 10 |
| 14 | 16.97 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 11 |
| 16 | 16.98 | temperature | 25.0 | 10 | > th | dose independent | rect. | 1 | 4 |
| 25 | 17.02 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 23 | 17 |
| 26 | 17.03 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 23 | 18 |
| 29 | 17.04 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 17 | 2 |
| 32 | 17.05 | temperature | 25.0 | 30 | > th | dose independent | rect. | 1 | 16 |
| 36 | 17.05 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 15 |
| 39 | 17.06 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 1 | 16 |
| 44 | 17.06 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 21 | 20 |
| 47 | 17.07 | temperature | 25.0 | 90 | > th | dose independent | rect. | 3 | 14 |
| 51 | 17.07 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 3 | 13 |
| 53 | 17.07 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 17 | 17 |
| 60 | 17.08 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 3 | 14 |
| 80 | 17.10 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 17 | 6 |
| 94 | 17.12 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 17 | 17 |
| 101 | 17.12 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 22 |
| 102 | 17.13 | temperature | 25.0 | 270 | < th | dose independent | sin | 5 | NA |
| 104 | 17.13 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 126 | 17.15 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 17 | 4 |
| 131 | 17.16 | temperature | 25.0 | 270 | > th | dose independent | sin | 5 | NA |
| 132 | 17.16 | temperature | 25.0 | 90 | > th | dose independent | rect. | 3 | 2 |
| 140 | 17.16 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 2 | 3 |
| 162 | 17.19 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 167 | 17.20 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 170 | 17.20 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 173 | 17.20 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 177 | 17.20 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 186 | 17.20 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 187 | 17.20 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 188 | 17.20 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 198 | 17.20 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 199 | 17.20 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 202 | 17.20 | temperature | 25.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 203 | 17.20 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 10 | 7 |
| 224 | 17.21 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 225 | 17.21 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 226 | 17.22 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 230 | 17.22 | temperature | 25.0 | 90 | > th | dose independent | rect. | 7 | 10 |
| 233 | 17.22 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 238 | 17.22 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 18 | 10 |
| 243 | 17.22 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 17 | 15 |
| 280 | 17.24 | temperature | 25.0 | 720 | < th | dose independent | rect. | 7 | 1 |
| 286 | 17.24 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 18 | 8 |
| 310 | 17.25 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 14 |
| 314 | 17.25 | temperature | 25.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 315 | 17.25 | wind | 1.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 316 | 17.25 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 335 | 17.26 | temperature | 25.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 336 | 17.26 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 17 | 14 |
| 373 | 17.27 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 381 | 17.28 | humidity | 90.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 382 | 17.28 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 413 | 17.29 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 439 | 17.30 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 462 | 17.31 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 465 | 17.31 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 477 | 17.31 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 478 | 17.31 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 479 | 17.32 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 494 | 17.32 | wind | 3.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 495 | 17.32 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 500 | 17.32 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 20 | 11 |
| 516 | 17.33 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 518 | 17.33 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 20 | 1 |
| 534 | 17.34 | humidity | 80.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 548 | 17.34 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 551 | 17.34 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 575 | 17.35 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 601 | 17.36 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 602 | 17.36 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 603 | 17.36 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 608 | 17.36 | temperature | 25.0 | 90 | > th | dose independent | rect. | 17 | 14 |
| 613 | 17.36 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 616 | 17.36 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 618 | 17.36 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 7 |
| 623 | 17.36 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 632 | 17.37 | atmosphere | 1000.0 | 90 | > th | dose independent | sin | 3 | NA |
| 633 | 17.37 | wind | 9.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 634 | 17.37 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 637 | 17.37 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 642 | 17.37 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 644 | 17.37 | radiation | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 649 | 17.37 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 1 |
| 656 | 17.37 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 657 | 17.37 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 22 | 23 |
| 662 | 17.37 | wind | 7.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 664 | 17.37 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 666 | 17.37 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 670 | 17.37 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 685 | 17.37 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 695 | 17.38 | wind | 1.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 696 | 17.38 | wind | 3.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 699 | 17.38 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 702 | 17.38 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 705 | 17.38 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 707 | 17.38 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 711 | 17.38 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 714 | 17.38 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 716 | 17.38 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 721 | 17.38 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 731 | 17.38 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 19 | 22 |
| 733 | 17.38 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 740 | 17.38 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 745 | 17.38 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 755 | 17.38 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 757 | 17.38 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 21 | 15 |
| 765 | 17.39 | atmosphere | 1000.0 | 720 | > th | dose independent | sin | 8 | NA |
| 768 | 17.39 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 16 | 3 |
| 777 | 17.39 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 778 | 17.39 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 787 | 17.39 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 21 | 11 |
| 811 | 17.40 | wind | 1.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 830 | 17.40 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 1 | 3 |
| 832 | 17.40 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 848 | 17.40 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 852 | 17.40 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 867 | 17.40 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 895 | 17.41 | atmosphere | 1000.0 | 270 | < th | dose independent | no | NA | NA |
| 900 | 17.41 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 903 | 17.41 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 907 | 17.41 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 914 | 17.41 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 915 | 17.41 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 937 | 17.41 | temperature | 25.0 | 270 | < th | dose independent | rect. | 5 | 6 |
| 940 | 17.41 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 941 | 17.41 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 23 | 13 |
| 947 | 17.41 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 22 | 19 |
| 953 | 17.41 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 956 | 17.41 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 991 | 17.41 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 19 | 20 |
| 996 | 17.42 | atmosphere | 1000.0 | 270 | > th | dose independent | no | NA | NA |