BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0183900 Os06g0183900|AK102112
         (350 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58020.1  | chr5:23485585-23486649 FORWARD LENGTH=355          288   2e-78

>AT5G58020.1 | chr5:23485585-23486649 FORWARD LENGTH=355
          Length = 354

 Score =  288 bits (738), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 146/262 (55%), Positives = 180/262 (68%), Gaps = 6/262 (2%)

Query: 94  ESRDCYLSMYLAKKPDKADPNEARLSRFTCCALSGEPLAAPAVADRLGNLFNKEALVEAL 153
           ESRDCYL+MY  KKPDK DPNE RLS++  CALS EPLA P V D LGNLFNKE LV AL
Sbjct: 94  ESRDCYLNMYAEKKPDKVDPNEQRLSKWLNCALSNEPLAEPCVIDLLGNLFNKEVLVHAL 153

Query: 154 LHKRLPKALSHIRGLKDMIPIHLHPKPDADAAGEEV---RFQCPVTGLDFNGKYQFLALR 210
           L KRLPK  S+I+GLKDM+ I L P   +D + ++    +FQCPV+GL+FNGKY+F ALR
Sbjct: 154 LSKRLPKQFSYIKGLKDMVNIKLTPVAGSDGSSQDTTSAQFQCPVSGLEFNGKYKFFALR 213

Query: 211 KCGHVLSVKALKEVKTSACLVCHKEFDEADKMPLNGTEDEVAALRLRMXXXXXXXXXXXX 270
            CGHV+S KALKEVK+S+CLVCH +  ++DK+ +NGTE+EV  LR RM            
Sbjct: 214 GCGHVMSAKALKEVKSSSCLVCHADVKDSDKIVINGTEEEVDLLRERMEEEKAKLREKKG 273

Query: 271 XXXXNGLSGSKHXXXXXXXXXXEKLENGK-KGEAPSLKRFKAGDHAPAYANKEVYASIFT 329
               +  +G+             ++E+G   G   ++K+FKA D  P  A KEVYAS+FT
Sbjct: 274 VSKKSK-NGAAVVADTGAKVAKRQIEDGNVNGNGITVKKFKAADKVPVNATKEVYASLFT 332

Query: 330 SS-KKSDFKETYSCRSLPLGRN 350
           SS KKSDF+ETYSCRSLPLGRN
Sbjct: 333 SSKKKSDFRETYSCRSLPLGRN 354



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,980,639
Number of extensions: 212336
Number of successful extensions: 453
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 251
Effective length of database: 8,392,385
Effective search space: 2106488635
Effective search space used: 2106488635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)