Os06g0178900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Vacuolar H+-pyrophosphatase (EC 3.6.1.1) (Ovp2).
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Os06g0178900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Vacuolar H+-pyrophosphatase (EC 3.6.1.1) (Ovp2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.74 | 0.639 | 11 | -1.43 | 1.63 | 1.56 | 0.137 | -3.51 | -0.211 | 19 | 28.38 | 1237 | -- | -- |
| 185.94 | 0.635 | 10.9 | -0.711 | 1.62 | 1.19 | -0.0656 | -- | -0.0972 | 19 | 28.4 | 1218 | -- | -- |
| 184.74 | 0.633 | 11 | -1.38 | 1.62 | 1.55 | -- | -3.29 | -0.202 | 18.9 | 28.4 | 1224 | -- | -- |
| 185.81 | 0.635 | 10.9 | -0.698 | 1.64 | 1.19 | -- | -- | -0.119 | 18.9 | 28.41 | 1215 | -- | -- |
| 248.45 | 0.734 | 11 | -1.66 | -- | 2.64 | -- | -5.38 | -0.577 | -- | 24.95 | 618 | -- | -- |
| 248.88 | 0.74 | 10.9 | -0.378 | 1.63 | -- | 0.229 | -- | -0.236 | 19.4 | -- | -- | -- | -- |
| 249.02 | 0.739 | 10.9 | -0.383 | 1.63 | -- | -- | -- | -0.235 | 19.4 | -- | -- | -- | -- |
| 254.64 | 0.743 | 10.9 | -0.84 | -- | 2.19 | -- | -- | -0.443 | -- | 24.7 | 640 | -- | -- |
| 198.52 | 0.656 | 10.9 | -- | 1.63 | 1.05 | -- | -- | -0.0375 | 19 | 28.78 | 1206 | -- | -- |
| 391.51 | 0.925 | 10.9 | -0.409 | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
| 252.89 | 0.744 | 10.9 | -- | 1.64 | -- | -- | -- | -0.192 | 19.4 | -- | -- | -- | -- |
| 272.28 | 0.769 | 10.9 | -- | -- | 2.05 | -- | -- | -0.328 | -- | 24.9 | 619 | -- | -- |
| 395.92 | 0.929 | 10.9 | -- | -- | -- | -- | -- | -0.216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 187.22 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 2 | 187.80 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 3 | 188.50 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 4 | 188.69 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 10 |
| 13 | 188.85 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 15 | 188.91 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 20 | 189.38 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 22 | 189.67 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 24 | 190.09 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 25 | 190.11 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 26 | 190.29 | humidity | 60 | 4320 | < th | dose dependent | rect. | 16 | 4 |
| 41 | 190.58 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 42 | 190.62 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 56 | 190.75 | humidity | 50 | 4320 | > th | dose independent | sin | 12 | NA |
| 59 | 191.26 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 61 | 191.32 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 62 | 191.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 63 | 191.35 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 22 |
| 67 | 191.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 77 | 191.53 | temperature | 30 | 1440 | > th | dose independent | sin | 11 | NA |
| 79 | 191.54 | radiation | 1 | 270 | > th | dose independent | rect. | 12 | 18 |
| 81 | 191.56 | radiation | 1 | 270 | > th | dose independent | rect. | 12 | 7 |
| 95 | 191.59 | temperature | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 101 | 191.65 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 102 | 191.65 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 248 | 191.78 | temperature | 30 | 1440 | > th | dose dependent | sin | 22 | NA |
| 268 | 191.81 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 271 | 191.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 276 | 191.83 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 287 | 191.92 | radiation | 1 | 270 | > th | dose independent | sin | 17 | NA |
| 338 | 192.09 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 4 |
| 341 | 192.12 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 18 |
| 353 | 192.23 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 381 | 192.23 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 383 | 192.24 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 400 | 192.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 403 | 192.29 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 506 | 192.34 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 607 | 192.45 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 19 |
| 618 | 192.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 639 | 192.53 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 651 | 192.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 656 | 192.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 662 | 192.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 665 | 192.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 15 |
| 712 | 192.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 732 | 192.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 799 | 192.67 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 824 | 192.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 864 | 192.82 | radiation | 1 | 270 | < th | dose independent | sin | 17 | NA |
| 869 | 192.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 871 | 192.83 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 946 | 193.10 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 10 |
| 985 | 193.24 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 992 | 193.26 | humidity | 50 | 4320 | < th | dose independent | sin | 11 | NA |