BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0178900 Os06g0178900|AK066933
(767 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G15690.1 | chr1:5399115-5402185 FORWARD LENGTH=771 1313 0.0
AT1G16780.1 | chr1:5739468-5743818 REVERSE LENGTH=852 452 e-127
AT1G78920.1 | chr1:29672340-29676761 FORWARD LENGTH=803 444 e-124
>AT1G15690.1 | chr1:5399115-5402185 FORWARD LENGTH=771
Length = 770
Score = 1313 bits (3399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 650/768 (84%), Positives = 699/768 (91%), Gaps = 4/768 (0%)
Query: 2 AILSALGTEVFIPXXXXXXXXXXXXQWLLVARVKVNPXXXXXXXXSGGSKNG--GYGDYL 59
A+L L TE+ +P QW +V+RVK+ SGG+ NG GYGDYL
Sbjct: 5 ALLPELWTEILVPICAVIGIAFSLFQWYVVSRVKLT--SDLGASSSGGANNGKNGYGDYL 62
Query: 60 IEEEEGLNDHNVVVKCHEIQTAISEGATSFLFTEYQYVGIFMSIFAVVIFLFLGSVEGFS 119
IEEEEG+ND +VV KC EIQTAISEGATSFLFTEY+YVG+FM FA VIF+FLGSVEGFS
Sbjct: 63 IEEEEGVNDQSVVAKCAEIQTAISEGATSFLFTEYKYVGVFMIFFAAVIFVFLGSVEGFS 122
Query: 120 TKSQPCTYSKDKYCKPALFNALFSTASFLLGAITSLVSGYLGMKIATFANARTTLEARKG 179
T ++PCTY + CKPAL A FST +F+LGA+TS++SG+LGMKIAT+ANARTTLEARKG
Sbjct: 123 TDNKPCTYDTTRTCKPALATAAFSTIAFVLGAVTSVLSGFLGMKIATYANARTTLEARKG 182
Query: 180 VGKAFIIAFRSGAVMGFLLASSGLVVLYIAINVFKLYYGDDWEGLFESITGYGLGGSSMA 239
VGKAFI+AFRSGAVMGFLLA+SGL+VLYI INVFK+YYGDDWEGLFE+ITGYGLGGSSMA
Sbjct: 183 VGKAFIVAFRSGAVMGFLLAASGLLVLYITINVFKIYYGDDWEGLFEAITGYGLGGSSMA 242
Query: 240 LFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGS 299
LFGRVGGGIYTKAADVGADLVGK+ERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGS
Sbjct: 243 LFGRVGGGIYTKAADVGADLVGKIERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGS 302
Query: 300 YAESSCAALVVASISSFGINHDFTGMCYPLLVSSVGIIVCLITTLFATDFFEIKAVKEIE 359
YAE+SCAALVVASISSFGINHDFT MCYPLL+SS+GI+VCLITTLFATDFFEIK VKEIE
Sbjct: 303 YAEASCAALVVASISSFGINHDFTAMCYPLLISSMGILVCLITTLFATDFFEIKLVKEIE 362
Query: 360 PALKKQLIISTALMTVGIAIISWLALPAKFTIFNFGAQKEVTNWGLFFCVAIGLWAGLII 419
PALK QLIIST +MTVGIAI+SW+ LP FTIFNFG QK V NW LF CV +GLWAGLII
Sbjct: 363 PALKNQLIISTVIMTVGIAIVSWVGLPTSFTIFNFGTQKVVKNWQLFLCVCVGLWAGLII 422
Query: 420 GFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIYVSFSIAA 479
GFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIA+SI+VSFS AA
Sbjct: 423 GFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAISIFVSFSFAA 482
Query: 480 MYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAA 539
MYG+AVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAA
Sbjct: 483 MYGVAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAA 542
Query: 540 IGKGFAIGSAALVSLALFGAFVSRAGVKVVDVLSPKVFIGLIVGAMLPYWFSAMTMKSVG 599
IGKGFAIGSAALVSLALFGAFVSRAG+ VDVL+PKV IGL+VGAMLPYWFSAMTMKSVG
Sbjct: 543 IGKGFAIGSAALVSLALFGAFVSRAGIHTVDVLTPKVIIGLLVGAMLPYWFSAMTMKSVG 602
Query: 600 SAALKMVEEVRRQFNSIPGLMEGTGKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGT 659
SAALKMVEEVRRQFN+IPGLMEGT KPDYATCVKISTDASIKEMIPPG LVMLTPLIVG
Sbjct: 603 SAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGCLVMLTPLIVGF 662
Query: 660 LFGVETLSGVLAGALVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDCHKA 719
FGVETLSGVLAG+LVSGVQIAISASNTGGAWDNAKKYIEAG SEHA++LGPKGS+ HKA
Sbjct: 663 FFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGVSEHAKSLGPKGSEPHKA 722
Query: 720 AVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKWF 767
AVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGG+LFK+F
Sbjct: 723 AVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGILFKYF 770
>AT1G16780.1 | chr1:5739468-5743818 REVERSE LENGTH=852
Length = 851
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 289/729 (39%), Positives = 413/729 (56%), Gaps = 77/729 (10%)
Query: 77 EIQTAISEGATSFLFTEYQYVGIFMSIFAVVI---FLFLGSVEGFSTKSQPCTYSKDKYC 133
+I AI +GA FL T+Y + + A VI +LF + T ++
Sbjct: 150 QISDAIRDGAEGFLRTQYGTISKMAFLLAFVILCIYLF-----------RNLTPQQEASG 198
Query: 134 KPALFNALFSTASFLLGAITSLVSGYLGMKIATFANARTTLEARKGVGKAFIIAFRSGAV 193
+A + A+FLLGA+ S ++GY+GM ++ AN R + AR+ +A IA R+G
Sbjct: 199 LGRTMSAYITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGF 258
Query: 194 MGFLLASSGLVVLYIAINVFKLYYGDDWEGLFES------ITGYGLGGSSMALFGRVGGG 247
++ ++ + I + F ++ D G + + GYG G S +ALF ++GGG
Sbjct: 259 SALVVVGMAVIGIAILYSTFYVWLDVDSPGSMKVTDLPLLLVGYGFGASFVALFAQLGGG 318
Query: 248 IYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAA 307
IYTK ADVGADLVGKVE IPEDDPRNPAVIAD VGDNVGD A G+DLF S A +A
Sbjct: 319 IYTKGADVGADLVGKVEHGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISA 378
Query: 308 LVVASISSFGIN-HDFTG-MCYPLLVSSVGIIVCL--ITTLFATDFFEIKA-VKEIEPAL 362
+++ + D +G + +PL+V S +++ I ++ T +K+ V++ L
Sbjct: 379 MILGGTMAQKCKIEDPSGFILFPLVVHSFDLVISSIGILSIKGTRNASVKSPVEDPMVVL 438
Query: 363 KK--QLIISTALMTVGIAIISWLALPAKFTIFNFGAQKEVTNW-GLFFCVAIGLWAGLII 419
+K L I A++T G A WL ++ + W F C +G+ +
Sbjct: 439 QKGYSLTIILAVLTFG-ASTRWL----------LYTEQAPSAWLNFFMCGLVGIITAYVF 487
Query: 420 GFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIYVSFSI-- 477
+++ YYT Y PV+ +A + TG TN+I G++LG +S +P+ I+V+I +F +
Sbjct: 488 VWISRYYTDYKYEPVRTLALASSTGHGTNIIAGVSLGLESTALPVLVISVAIISAFWLGN 547
Query: 478 ------------AAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRE 525
++G AVA +GMLST A L +D +GPI+DNAGGI EM+ +RE
Sbjct: 548 TSGLIDEKGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVRE 607
Query: 526 RTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGV------KVVDVLSPKVFIG 579
TD LDA GNTT A KGFAIGSAAL S LF A++ K VD+ P+VFIG
Sbjct: 608 ITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVSAFANVSFKEVDIAIPEVFIG 667
Query: 580 LIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNSIPGLMEGTGKPDYATCVKISTDAS 639
++GAML + FSA +VG A ++V EVRRQF PG+M+ KPDY CV I ++
Sbjct: 668 GLLGAMLIFLFSAWACAAVGRTAQEVVNEVRRQFIERPGIMDYKEKPDYGRCVAIVASSA 727
Query: 640 IKEMIPPGALVMLTPLIVGTLF------------GVETLSGVLAGALVSGVQIAISASNT 687
++EMI PGAL +++P+ VG +F G + ++ +L A V G+ +A+ +
Sbjct: 728 LREMIKPGALAIISPIAVGFVFRILGYYTGQPLLGAKVVAAMLMFATVCGILMALFLNTA 787
Query: 688 GGAWDNAKKYIEAGASEHARTLGPKGSDCHKAAVIGDTIGDPLKDTSGPSLNILIKLMAV 747
GGAWDNAKKYIE GA LG KGSD HKAAV GDT+GDP KDT+GPS+++LIK++A
Sbjct: 788 GGAWDNAKKYIETGA------LGGKGSDSHKAAVTGDTVGDPFKDTAGPSIHVLIKMLAT 841
Query: 748 ESLVFAPFF 756
+LV AP F
Sbjct: 842 ITLVMAPIF 850
>AT1G78920.1 | chr1:29672340-29676761 FORWARD LENGTH=803
Length = 802
Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust.
Identities = 291/730 (39%), Positives = 413/730 (56%), Gaps = 79/730 (10%)
Query: 77 EIQTAISEGATSFLFTEYQYV---GIFMSIFAVVIFLFLGSVEGFSTKSQPCTYSKDKYC 133
EI AI +GA F T+Y + I ++ + I+LF + T ++
Sbjct: 101 EISDAIRDGAEGFFRTQYSTISKMAILLAFVILCIYLF-----------RSLTPQQEAAG 149
Query: 134 KPALFNALFSTASFLLGAITSLVSGYLGMKIATFANARTTLEARKGVGKAFIIAFRSGAV 193
+A + A+FLLGA+ S ++GY+GM ++ AN R + AR+ +A IA R+G
Sbjct: 150 LGRAMSAYITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGF 209
Query: 194 MGFLLASSGLVVLYIAINVFKLYYGDDWEGLFES------ITGYGLGGSSMALFGRVGGG 247
++ ++ + I + F ++ G G + GYG G S +ALF ++GGG
Sbjct: 210 SALVVVGMAVIGIAILYSTFYVWLGVGSPGSMNVTDLPLLLVGYGFGASFVALFAQLGGG 269
Query: 248 IYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAA 307
IYTK ADVGADLVGKVE+ IPEDDPRNPAVIAD VGDNVGD A G+DLF S A +A
Sbjct: 270 IYTKGADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISA 329
Query: 308 LVVASISSFGIN-HDFTG-MCYPLLVSSVGIIVCLITTLFA--TDFFEIKA-VKEIEPAL 362
+++ + D +G + +PL+V S +I+ I L T +K+ V++ L
Sbjct: 330 MILGGTMAKKCKIEDPSGFILFPLVVHSFDLIISSIGILSIKGTRDASVKSPVEDPMAVL 389
Query: 363 KK--QLIISTALMTVGIAIISWLAL--PAKFTIFNFGAQKEVTNWGLFFCVAIGLWAGLI 418
+K L I A++T G A WL A FNF C +G+ I
Sbjct: 390 QKGYSLTIILAVITFG-ASTRWLLYTEQAPSAWFNFA-----------LCGLVGIITAYI 437
Query: 419 IGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIYVSFSI- 477
++++YYT + PV+ +A + TG TN+I G++LG +S +P+ I+V+I ++ +
Sbjct: 438 FVWISKYYTDYKHEPVRTLALASSTGHGTNIIAGVSLGLESTALPVLTISVAIISAYWLG 497
Query: 478 -------------AAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIR 524
++G AVA +GMLST A L +D +GPI+DNAGGI EM+ +R
Sbjct: 498 NTSGLVDENGIPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVR 557
Query: 525 ERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGV------KVVDVLSPKVFI 578
E TD LDA GNTT A KGFAIGSAAL S LF A++ K VD+ P+VF+
Sbjct: 558 EITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVSAFANVSFKEVDIAIPEVFV 617
Query: 579 GLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNSIPGLMEGTGKPDYATCVKISTDA 638
G ++GAML + FSA +VG A ++V EVRRQF PG+ME KPDY+ CV I A
Sbjct: 618 GGLLGAMLIFLFSAWACAAVGRTAQEVVNEVRRQFIERPGIMEYKEKPDYSRCVAIVASA 677
Query: 639 SIKEMIPPGALVMLTPLIVGTLF------------GVETLSGVLAGALVSGVQIAISASN 686
+++EMI PGAL + +P++VG +F G + ++ +L A V G+ +A+ +
Sbjct: 678 ALREMIKPGALAIASPIVVGLVFRILGYYTGQPLLGAKVVASMLMFATVCGILMALFLNT 737
Query: 687 TGGAWDNAKKYIEAGASEHARTLGPKGSDCHKAAVIGDTIGDPLKDTSGPSLNILIKLMA 746
GGAWDNAKKYIE GA LG KGS+ HKAAV GDT+GDP KDT+GPS+++LIK++A
Sbjct: 738 AGGAWDNAKKYIETGA------LGGKGSEAHKAAVTGDTVGDPFKDTAGPSIHVLIKMLA 791
Query: 747 VESLVFAPFF 756
+LV AP F
Sbjct: 792 TITLVMAPVF 801
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,951,108
Number of extensions: 610683
Number of successful extensions: 1582
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1566
Number of HSP's successfully gapped: 3
Length of query: 767
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 661
Effective length of database: 8,200,473
Effective search space: 5420512653
Effective search space used: 5420512653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 116 (49.3 bits)