Os06g0163600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os06g0163600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.46 | 0.191 | 11.2 | 0.205 | 0.0201 | -0.401 | -0.812 | 0.496 | -0.0167 | 2.92 | 9.996 | 721 | -- | -- |
| 16.63 | 0.19 | 11.2 | 0.201 | 0.0127 | -0.386 | -0.62 | -- | -0.0137 | 1.88 | 9.996 | 730 | -- | -- |
| 18.33 | 0.199 | 11.2 | 0.244 | 0.0679 | -0.335 | -- | 0.263 | -0.0195 | 15 | 9.994 | 824 | -- | -- |
| 18.08 | 0.198 | 11.2 | 0.205 | 0.00788 | -0.381 | -- | -- | -0.0123 | 3.03 | 9.99 | 730 | -- | -- |
| 18.23 | 0.199 | 11.2 | 0.219 | -- | -0.345 | -- | -0.25 | -0.0219 | -- | 9.892 | 736 | -- | -- |
| 19.69 | 0.208 | 11.2 | 0.201 | 0.267 | -- | 0.39 | -- | 0.0121 | 17.2 | -- | -- | -- | -- |
| 19.93 | 0.209 | 11.2 | 0.199 | 0.276 | -- | -- | -- | 0.0135 | 17.9 | -- | -- | -- | -- |
| 18.08 | 0.198 | 11.2 | 0.205 | -- | -0.384 | -- | -- | -0.0128 | -- | 9.996 | 730 | -- | -- |
| 18.92 | 0.203 | 11.2 | -- | 0.0105 | -0.41 | -- | -- | -0.0585 | 2.05 | 12.53 | 686 | -- | -- |
| 23.86 | 0.228 | 11.2 | 0.191 | -- | -- | -- | -- | 0.00715 | -- | -- | -- | -- | -- |
| 20.98 | 0.214 | 11.2 | -- | 0.272 | -- | -- | -- | -0.00866 | 17.9 | -- | -- | -- | -- |
| 18.91 | 0.203 | 11.2 | -- | -- | -0.391 | -- | -- | -0.057 | -- | 13.7 | 689 | -- | -- |
| 24.83 | 0.233 | 11.2 | -- | -- | -- | -- | -- | -0.014 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.84 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 2 | 15.85 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 4 | 15.93 | wind | 3 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 5 | 15.94 | wind | 3 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 6 | 15.94 | wind | 3 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 8 | 15.96 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 9 | 15.96 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 12 | 15.96 | wind | 5 | 14400 | < th | dose dependent | rect. | 19 | 3 |
| 13 | 15.97 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 31 | 15.97 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 50 | 16.00 | radiation | 20 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 52 | 16.01 | radiation | 10 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 54 | 16.02 | radiation | 20 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 62 | 16.05 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 65 | 16.05 | radiation | 20 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 73 | 16.07 | radiation | 10 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 87 | 16.07 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 95 | 16.09 | radiation | 20 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 101 | 16.10 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 123 | 16.11 | radiation | 10 | 43200 | > th | dose independent | sin | 8 | NA |
| 124 | 16.11 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 126 | 16.11 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 139 | 16.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 142 | 16.12 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 149 | 16.12 | wind | 5 | 14400 | < th | dose dependent | rect. | 8 | 7 |
| 168 | 16.13 | wind | 3 | 14400 | > th | dose independent | rect. | 8 | 17 |
| 169 | 16.13 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 175 | 16.14 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 176 | 16.14 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 201 | 16.15 | wind | 3 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 206 | 16.15 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 224 | 16.16 | wind | 3 | 14400 | < th | dose independent | rect. | 8 | 17 |
| 227 | 16.16 | wind | 3 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 231 | 16.17 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 243 | 16.17 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 246 | 16.17 | wind | 3 | 14400 | < th | dose dependent | rect. | 8 | 4 |
| 255 | 16.18 | humidity | 70 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 256 | 16.18 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 275 | 16.19 | humidity | 70 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 298 | 16.19 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 329 | 16.19 | wind | 1 | 14400 | > th | dose dependent | rect. | 8 | 16 |
| 330 | 16.19 | wind | 7 | 14400 | < th | dose dependent | rect. | 8 | 16 |
| 336 | 16.20 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 338 | 16.20 | humidity | 70 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 368 | 16.21 | humidity | 70 | 43200 | < th | dose independent | sin | 3 | NA |
| 392 | 16.21 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 408 | 16.22 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 438 | 16.22 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 477 | 16.23 | humidity | 70 | 43200 | < th | dose independent | rect. | 3 | 16 |
| 487 | 16.23 | humidity | 90 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 495 | 16.23 | wind | 1 | 14400 | > th | dose dependent | rect. | 8 | 9 |
| 502 | 16.24 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 503 | 16.24 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 511 | 16.24 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 555 | 16.24 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 14 |
| 574 | 16.25 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 612 | 16.25 | radiation | 10 | 720 | < th | dose independent | rect. | 7 | 22 |
| 617 | 16.25 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 636 | 16.25 | wind | 1 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 647 | 16.26 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 676 | 16.26 | wind | 1 | 14400 | > th | dose dependent | sin | 22 | NA |
| 687 | 16.26 | wind | 1 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 708 | 16.27 | radiation | 20 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 712 | 16.27 | wind | 3 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 759 | 16.27 | wind | 9 | 14400 | < th | dose dependent | sin | 22 | NA |
| 760 | 16.27 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 8 | NA |
| 771 | 16.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 772 | 16.27 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 12 |
| 879 | 16.29 | radiation | 10 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 927 | 16.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 961 | 16.30 | atmosphere | 995 | 43200 | < th | dose independent | sin | 8 | NA |
| 964 | 16.30 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 2 |