BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0163600 Os06g0163600|J065190M16
         (143 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61540.1  | chr3:22773399-22775699 FORWARD LENGTH=516          214   2e-56

>AT3G61540.1 | chr3:22773399-22775699 FORWARD LENGTH=516
          Length = 515

 Score =  214 bits (544), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 95/143 (66%), Positives = 116/143 (81%)

Query: 1   QGSPSKWSAHKIGSECESLFDPIKAIKEGRPVYFTGEMVFPCIFDEIHALRPLKETAHML 60
           +G+ S WSAH++  + E  FD +KA+KE +PV FTGEM+FP +FDEIHAL+P K  A +L
Sbjct: 373 EGASSGWSAHRLRDKYEYKFDAMKAVKESQPVLFTGEMIFPWMFDEIHALKPFKAAADLL 432

Query: 61  AHKEDWPPLYDVNVLNNNKVPVAAAVYYEDMYVNFNIAKETASQIAGIRLWITNEYMHSG 120
           A KEDWPPLYDV  L NNKVPVAAAVYYEDMYVNF +  ETAS I+GIRLW+TNE+MHSG
Sbjct: 433 AKKEDWPPLYDVPRLQNNKVPVAAAVYYEDMYVNFKLVTETASHISGIRLWVTNEFMHSG 492

Query: 121 IRDGGSHVFDHLMGLLNGKKPLF 143
           +RD G  + DHL+G++NGKKPLF
Sbjct: 493 LRDAGRQIIDHLLGMINGKKPLF 515



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,477,028
Number of extensions: 136055
Number of successful extensions: 277
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 54
Effective length of database: 8,666,545
Effective search space: 467993430
Effective search space used: 467993430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)