Os06g0157500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CiFT protein.
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Os06g0157500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CiFT protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 440.85 | 0.986 | 7.81 | 3.77 | 1.84 | -4.35 | 4.06 | -0.777 | 1.78 | 8.91 | 24.98 | 4298 | 7.12 | 3.88 |
| 441.4 | 0.979 | 7.82 | 3.73 | 1.88 | -4.25 | 4.21 | -- | 1.82 | 8.88 | 25 | 4303 | 7.13 | 3.55 |
| 495.28 | 1.04 | 7.81 | 3.91 | 1.88 | -4.3 | -- | -0.499 | 1.8 | 8.72 | 24.99 | 4327 | 7.21 | 3.5 |
| 495.33 | 1.04 | 7.82 | 3.87 | 1.88 | -4.27 | -- | -- | 1.81 | 8.69 | 24.96 | 4330 | 7.28 | 3.17 |
| 668.64 | 1.2 | 7.93 | 4.03 | -- | -4.39 | -- | -0.712 | 1.55 | -- | 25 | 5572 | 7.21 | 3.38 |
| 1317.74 | 1.7 | 7.52 | 6.09 | 1.84 | -- | 3.88 | -- | 3.15 | 8.36 | -- | -- | -- | -- |
| 1364.44 | 1.73 | 7.53 | 6.2 | 1.85 | -- | -- | -- | 3.15 | 8.19 | -- | -- | -- | -- |
| 659.05 | 1.2 | 7.89 | 3.83 | -- | -4.39 | -- | -- | 1.58 | -- | 24.9 | 5571 | 7.63 | 2.53 |
| 595.15 | 1.14 | 8.02 | -- | 2.4 | -5.38 | -- | -- | 1.17 | 8.64 | 22.4 | 34559 | 6.81 | 4.32 |
| 1552.46 | 1.84 | 7.57 | 6.21 | -- | -- | -- | -- | 3.17 | -- | -- | -- | -- | -- |
| 2377.36 | 2.28 | 7.68 | -- | 1.88 | -- | -- | -- | 2.46 | 7.95 | -- | -- | -- | -- |
| 733.53 | 1.26 | 8.07 | -- | -- | -5.44 | -- | -- | 0.863 | -- | 22.95 | 37423 | 6.56 | 3.73 |
| 2570.93 | 2.37 | 7.73 | -- | -- | -- | -- | -- | 2.48 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 404.52 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 3 | 406.64 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 5 | 407.70 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 14 |
| 6 | 407.88 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 13 |
| 10 | 408.53 | temperature | 25 | 14400 | > th | dose independent | sin | 9 | NA |
| 12 | 408.88 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 15 | 409.12 | temperature | 25 | 14400 | < th | dose independent | sin | 9 | NA |
| 22 | 409.77 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 33 | 411.62 | temperature | 25 | 14400 | > th | dose independent | rect. | 20 | 16 |
| 37 | 412.01 | temperature | 25 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 47 | 412.81 | temperature | 25 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 50 | 412.95 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 57 | 413.37 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 15 |
| 64 | 413.82 | temperature | 25 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 98 | 415.45 | temperature | 20 | 43200 | > th | dose independent | rect. | 10 | 13 |
| 137 | 416.57 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 9 |
| 140 | 416.59 | temperature | 20 | 43200 | < th | dose independent | rect. | 11 | 12 |
| 141 | 416.59 | temperature | 20 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 172 | 417.13 | temperature | 25 | 43200 | < th | dose dependent | rect. | 11 | 7 |
| 217 | 418.44 | temperature | 25 | 14400 | > th | dose dependent | sin | 14 | NA |
| 223 | 418.63 | temperature | 20 | 43200 | > th | dose independent | sin | 19 | NA |
| 262 | 419.33 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 281 | 419.79 | temperature | 20 | 43200 | < th | dose independent | sin | 19 | NA |
| 307 | 420.44 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 414 | 422.82 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 417 | 422.91 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 472 | 424.06 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 5 |
| 585 | 426.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 587 | 426.89 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 656 | 428.37 | temperature | 20 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 715 | 429.98 | temperature | 25 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 732 | 430.41 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 22 |
| 750 | 430.77 | temperature | 25 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 775 | 431.24 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 783 | 431.34 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 795 | 431.46 | temperature | 25 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 804 | 431.57 | temperature | 25 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 805 | 431.58 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 812 | 431.65 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 844 | 431.94 | temperature | 25 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 882 | 432.43 | temperature | 25 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 997 | 433.75 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 23 |