BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0157500 Os06g0157500|AB062676
(178 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G65480.1 | chr1:24331510-24333689 FORWARD LENGTH=176 270 3e-73
AT4G20370.1 | chr4:11001011-11002965 REVERSE LENGTH=176 263 5e-71
AT5G03840.1 | chr5:1024760-1025796 REVERSE LENGTH=178 202 6e-53
AT5G62040.1 | chr5:24922810-24923709 FORWARD LENGTH=178 201 2e-52
AT2G27550.1 | chr2:11773417-11774509 FORWARD LENGTH=176 194 2e-50
AT1G18100.1 | chr1:6228049-6230110 REVERSE LENGTH=174 183 4e-47
>AT1G65480.1 | chr1:24331510-24333689 FORWARD LENGTH=176
Length = 175
Score = 270 bits (690), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 122/169 (72%), Positives = 144/169 (85%)
Query: 8 DPLVVGRIVGDVLDPFVRITNLSVSYGARIVSNGCELKPSMVTQQPRVVVGGNDMRTFYT 67
DPL+V R+VGDVLDPF R L V+YG R V+NG +L+PS V +PRV +GG D+R FYT
Sbjct: 7 DPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLDLRPSQVQNKPRVEIGGEDLRNFYT 66
Query: 68 LVMVDPDAPSPSNPNLREYLHWLVTDIPGTTGATFGQEVMCYESPRPTMGIHRLVFVLFQ 127
LVMVDPD PSPSNP+LREYLHWLVTDIP TTG TFG E++CYE+P PT GIHR+VF+LF+
Sbjct: 67 LVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVVFILFR 126
Query: 128 QLGRQTVYAPGWRQNFSTRNFAELYNLGSPVATVYFNCQREAGSGGRRV 176
QLGRQTVYAPGWRQNF+TR FAE+YNLG PVA V++NCQRE+G GGRR+
Sbjct: 127 QLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNCQRESGCGGRRL 175
>AT4G20370.1 | chr4:11001011-11002965 REVERSE LENGTH=176
Length = 175
Score = 263 bits (671), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 123/170 (72%), Positives = 139/170 (81%)
Query: 6 RDDPLVVGRIVGDVLDPFVRITNLSVSYGARIVSNGCELKPSMVTQQPRVVVGGNDMRTF 65
R DPLVVG +VGDVLDPF R+ +L V+YG R V+NG +L+PS V +P V +GG+D R F
Sbjct: 5 RRDPLVVGSVVGDVLDPFTRLVSLKVTYGHREVTNGLDLRPSQVLNKPIVEIGGDDFRNF 64
Query: 66 YTLVMVDPDAPSPSNPNLREYLHWLVTDIPGTTGATFGQEVMCYESPRPTMGIHRLVFVL 125
YTLVMVDPD PSPSNP+ REYLHWLVTDIP TTG FG EV+CYESPRP GIHR+V VL
Sbjct: 65 YTLVMVDPDVPSPSNPHQREYLHWLVTDIPATTGNAFGNEVVCYESPRPPSGIHRIVLVL 124
Query: 126 FQQLGRQTVYAPGWRQNFSTRNFAELYNLGSPVATVYFNCQREAGSGGRR 175
F+QLGRQTVYAPGWRQ F+TR FAE+YNLG PVA YFNCQRE G GGRR
Sbjct: 125 FRQLGRQTVYAPGWRQQFNTREFAEIYNLGLPVAASYFNCQRENGCGGRR 174
>AT5G03840.1 | chr5:1024760-1025796 REVERSE LENGTH=178
Length = 177
Score = 202 bits (515), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 96/169 (56%), Positives = 128/169 (75%), Gaps = 3/169 (1%)
Query: 8 DPLVVGRIVGDVLDPFVRITNLSVSYGARIVSNGCELKPSMVTQQPRVVVGGNDMRTFYT 67
+PL++GR+VGDVLD F T ++VSY + VSNG EL PS V+ +PRV + G D+R+F+T
Sbjct: 10 EPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFT 69
Query: 68 LVMVDPDAPSPSNPNLREYLHWLVTDIPGTTGATFGQEVMCYESPRPTMGIHRLVFVLFQ 127
LVM+DPD P PS+P L+E+LHW+VT+IPGTT ATFG+EV+ YE PRP++GIHR VFVLF+
Sbjct: 70 LVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFR 129
Query: 128 QLGRQTVY--APGWRQNFSTRNFAELYNLGSPVATVYFNCQREAGSGGR 174
Q R+ ++ P R +F+TR FA Y+LG PVA V+FN QRE + R
Sbjct: 130 QKQRRVIFPNIPS-RDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 177
>AT5G62040.1 | chr5:24922810-24923709 FORWARD LENGTH=178
Length = 177
Score = 201 bits (510), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 126/172 (73%), Gaps = 2/172 (1%)
Query: 8 DPLVVGRIVGDVLDPFVRITNLSVSYGAR-IVSNGCELKPSMVTQQPRVVVGGNDMRTFY 66
+PL+VGR++GDVL+ F + V++ + IVSNG EL PS++ +PRV +GG D+R+F+
Sbjct: 6 EPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQDLRSFF 65
Query: 67 TLVMVDPDAPSPSNPNLREYLHWLVTDIPGTTGATFGQEVMCYESPRPTMGIHRLVFVLF 126
TL+M+DPDAPSPSNP +REYLHW+VTDIPGTT A+FG+E++ YE+P+P GIHR VF LF
Sbjct: 66 TLIMMDPDAPSPSNPYMREYLHWMVTDIPGTTDASFGREIVRYETPKPVAGIHRYVFALF 125
Query: 127 QQLGRQTVY-APGWRQNFSTRNFAELYNLGSPVATVYFNCQREAGSGGRRVY 177
+Q GRQ V AP R+ F+T F+ + L PVA VYFN QRE R Y
Sbjct: 126 KQRGRQAVKAAPETRECFNTNAFSSYFGLSQPVAAVYFNAQRETAPRRRPSY 177
>AT2G27550.1 | chr2:11773417-11774509 FORWARD LENGTH=176
Length = 175
Score = 194 bits (494), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/169 (54%), Positives = 126/169 (74%), Gaps = 2/169 (1%)
Query: 8 DPLVVGRIVGDVLDPFVRITNLSVSYGA-RIVSNGCELKPSMVTQQPRVVVGGNDMRTFY 66
DPL+VGR++GDV+D ++ ++V+Y + + V NG EL PS+VT +P+V V G DMR+F+
Sbjct: 7 DPLMVGRVIGDVVDNCLQAVKMTVTYNSDKQVYNGHELFPSVVTYKPKVEVHGGDMRSFF 66
Query: 67 TLVMVDPDAPSPSNPNLREYLHWLVTDIPGTTGATFGQEVMCYESPRPTMGIHRLVFVLF 126
TLVM DPD P PS+P LRE+LHW+VTDIPGTT +FG+E++ YE PRP +GIHR V++LF
Sbjct: 67 TLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDVSFGKEIIGYEMPRPNIGIHRFVYLLF 126
Query: 127 QQLGRQTVYA-PGWRQNFSTRNFAELYNLGSPVATVYFNCQREAGSGGR 174
+Q R +V + P +R F+TR FA +LG PVA V+FNCQRE + R
Sbjct: 127 KQTRRGSVVSVPSYRDQFNTREFAHENDLGLPVAAVFFNCQRETAARRR 175
>AT1G18100.1 | chr1:6228049-6230110 REVERSE LENGTH=174
Length = 173
Score = 183 bits (465), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 116/169 (68%), Gaps = 3/169 (1%)
Query: 8 DPLVVGRIVGDVLDPFVRITNLSVSYGARIVSNGCELKPSMVTQQPRVVVGGNDMRTFYT 67
DPLVVGR++GDVLD F+ N+SV +G + ++NGCE+KPS P+V + G+ YT
Sbjct: 6 DPLVVGRVIGDVLDMFIPTANMSVYFGPKHITNGCEIKPSTAVNPPKVNISGHS-DELYT 64
Query: 68 LVMVDPDAPSPSNPNLREYLHWLVTDIPGTTGATFGQEVMCYESPRPTMGIHRLVFVLFQ 127
LVM DPDAPSPS PN+RE++HW+V DIPG T + G+E++ Y PRP +GIHR + VLF+
Sbjct: 65 LVMTDPDAPSPSEPNMREWVHWIVVDIPGGTNPSRGKEILPYMEPRPPVGIHRYILVLFR 124
Query: 128 QLGR--QTVYAPGWRQNFSTRNFAELYNLGSPVATVYFNCQREAGSGGR 174
Q V P R NFSTR FA ++LG PVATVYFN Q+E S R
Sbjct: 125 QNSPVGLMVQQPPSRANFSTRMFAGHFDLGLPVATVYFNAQKEPASRRR 173
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,220,842
Number of extensions: 180227
Number of successful extensions: 256
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 6
Length of query: 178
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 86
Effective length of database: 8,584,297
Effective search space: 738249542
Effective search space used: 738249542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)