Os06g0154400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0154400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.22 | 0.538 | 9.28 | -1.04 | 2.48 | -1.74 | 0.703 | 2.23 | -0.0977 | 5.83 | 20.1 | 4711 | -- | -- |
| 129.63 | 0.53 | 9.3 | -1.37 | 2.57 | -1.84 | 1.1 | -- | 0.0259 | 5.76 | 17.69 | 8396 | -- | -- |
| 132.35 | 0.536 | 9.28 | -1.02 | 2.47 | -1.74 | -- | 2.27 | -0.0975 | 5.78 | 20.22 | 4757 | -- | -- |
| 129.66 | 0.53 | 9.3 | -1.24 | 2.54 | -2.04 | -- | -- | 0.0691 | 5.71 | 16.38 | 9833 | -- | -- |
| 385.73 | 0.92 | 9.34 | -1.36 | -- | -2.62 | -- | 3.23 | -0.0246 | -- | 20.22 | 4757 | -- | -- |
| 211.78 | 0.682 | 9.45 | -2.46 | 2.49 | -- | 0.77 | -- | -0.633 | 5.91 | -- | -- | -- | -- |
| 213.18 | 0.684 | 9.46 | -2.46 | 2.5 | -- | -- | -- | -0.636 | 5.87 | -- | -- | -- | -- |
| 396.37 | 0.931 | 9.41 | -1.91 | -- | -2.44 | -- | -- | -0.185 | -- | 20.22 | 4757 | -- | -- |
| 142.04 | 0.555 | 9.25 | -- | 2.6 | -2.41 | -- | -- | 0.324 | 5.67 | 14.49 | 24335 | -- | -- |
| 536.09 | 1.08 | 9.5 | -2.38 | -- | -- | -- | -- | -0.578 | -- | -- | -- | -- | -- |
| 372.31 | 0.903 | 9.39 | -- | 2.46 | -- | -- | -- | -0.362 | 5.92 | -- | -- | -- | -- |
| 463.28 | 1 | 9.27 | -- | -- | -2.6 | -- | -- | 0.412 | -- | 0.8588 | 22174 | -- | -- |
| 685.69 | 1.22 | 9.44 | -- | -- | -- | -- | -- | -0.314 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 122.79 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 10 | 124.77 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 15 | 125.64 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 26 | 126.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 43 | 127.97 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 50 | 128.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 8 |
| 54 | 128.57 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 64 | 128.79 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 71 | 128.99 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 79 | 129.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 82 | 129.09 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 133 | 130.07 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 137 | 130.10 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 180 | 130.84 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 202 | 131.13 | temperature | 25 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 205 | 131.16 | temperature | 20 | 4320 | > th | dose dependent | sin | 5 | NA |
| 211 | 131.26 | temperature | 25 | 4320 | > th | dose independent | sin | 3 | NA |
| 231 | 131.45 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 252 | 131.63 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 261 | 131.74 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 14 |
| 264 | 131.75 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 271 | 131.82 | temperature | 25 | 4320 | < th | dose independent | sin | 3 | NA |
| 294 | 132.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 14 |
| 313 | 132.12 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 328 | 132.17 | temperature | 20 | 4320 | > th | dose dependent | rect. | 16 | 20 |
| 392 | 132.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 420 | 132.47 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 449 | 132.56 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 21 |
| 491 | 132.65 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 522 | 132.75 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 554 | 132.84 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 594 | 133.08 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 604 | 133.13 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 19 |
| 609 | 133.14 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 17 |
| 625 | 133.23 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 637 | 133.28 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 651 | 133.31 | temperature | 20 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 672 | 133.35 | temperature | 20 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 679 | 133.36 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 709 | 133.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 20 |
| 716 | 133.48 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 21 |
| 737 | 133.52 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 746 | 133.54 | temperature | 20 | 14400 | > th | dose independent | sin | 13 | NA |
| 805 | 133.68 | temperature | 20 | 14400 | < th | dose independent | sin | 13 | NA |
| 833 | 133.74 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 854 | 133.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 908 | 133.86 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 937 | 133.89 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 17 |