BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0154400 Os06g0154400|AK067799
(125 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G29120.5 | chr1:10174481-10178143 FORWARD LENGTH=457 154 2e-38
AT4G25770.1 | chr4:13117821-13119982 REVERSE LENGTH=419 55 6e-09
AT5G51180.1 | chr5:20797360-20799929 FORWARD LENGTH=358 53 4e-08
AT1G10040.1 | chr1:3276108-3278464 REVERSE LENGTH=413 48 1e-06
>AT1G29120.5 | chr1:10174481-10178143 FORWARD LENGTH=457
Length = 456
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 95/125 (76%)
Query: 1 MQPSHRSLDGYKHIVNMEYCSPISSDGPHFPLQAARAKEAAQSRPNKXXXXXXXXXXXXX 60
++PS RSLDGYKH+V++EYC P+SSDG HFP +AA+AKEAAQS P+
Sbjct: 332 IKPSRRSLDGYKHVVDVEYCPPVSSDGAHFPPEAAKAKEAAQSSPSPQNTLEYHEIVEEE 391
Query: 61 XIHGLQRVGWKKVDVNFHTALWPYFAHNNIHVKNEWLHNAGAGVIAHVADSIKQQESRKY 120
I GLQR+GWKKVDV+FH+ WPY AHNNIHVK+E L+ AGAGVIAHVADSIKQQES +
Sbjct: 392 MIRGLQRLGWKKVDVSFHSTFWPYLAHNNIHVKSERLYKAGAGVIAHVADSIKQQESSTF 451
Query: 121 FRANL 125
A+L
Sbjct: 452 ITASL 456
>AT4G25770.1 | chr4:13117821-13119982 REVERSE LENGTH=419
Length = 418
Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 62 IHGLQRVGWKKVDVNFHTALWPYFAHNNIHVKNEWLHNAGAGVIAHVAD 110
IHGL ++ W++VDV+FH + Y AH+ I VK WLH+ G V+ H+ D
Sbjct: 366 IHGLSQLSWERVDVSFHNSKQRYVAHSTIQVKTYWLHSDGKDVVFHMMD 414
>AT5G51180.1 | chr5:20797360-20799929 FORWARD LENGTH=358
Length = 357
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 62 IHGLQRVGWKKVDVNFHTALWPYFAHNNIHVKNEWLHNAGAGVIAHVAD 110
I GL V W+KVDV+FH++ + AH+ I VKNE +H GA VI H+ D
Sbjct: 305 IKGLSSVSWEKVDVSFHSSRQRFAAHSVIQVKNEDMHIEGADVIEHIID 353
>AT1G10040.1 | chr1:3276108-3278464 REVERSE LENGTH=413
Length = 412
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 62 IHGLQRVGWKKVDVNFHTALWPYFAHNNIHVKNEWLHNAGAGVIAHVADSIK 113
I L ++ W++VDV+F L + AHN I VK + +++AGA VI H+ D+ +
Sbjct: 360 IRELTKLSWERVDVSFRGTLQRFLAHNTIQVKTKMINSAGADVIQHMIDNFE 411
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,479,494
Number of extensions: 71445
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 4
Length of query: 125
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 39
Effective length of database: 8,748,793
Effective search space: 341202927
Effective search space used: 341202927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)