Os06g0151200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os06g0151200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.63 | 0.228 | 9.77 | -0.738 | 0.469 | 0.589 | 0.091 | 0.0287 | -0.0865 | 3 | 21.41 | 1531 | -- | -- |
| 23.63 | 0.226 | 9.77 | -0.743 | 0.469 | 0.585 | 0.0903 | -- | -0.0871 | 3.01 | 21.4 | 1530 | -- | -- |
| 23.65 | 0.227 | 9.77 | -0.74 | 0.47 | 0.588 | -- | 0.0295 | -0.0867 | 3.03 | 21.41 | 1530 | -- | -- |
| 23.65 | 0.227 | 9.77 | -0.747 | 0.47 | 0.586 | -- | -- | -0.0885 | 3.03 | 21.44 | 1532 | -- | -- |
| 35.18 | 0.276 | 9.76 | -0.707 | -- | 0.585 | -- | 0.0434 | -0.0772 | -- | 21.7 | 1237 | -- | -- |
| 33.49 | 0.271 | 9.73 | -0.502 | 0.48 | -- | 0.0407 | -- | 0.0786 | 3.01 | -- | -- | -- | -- |
| 33.5 | 0.271 | 9.73 | -0.503 | 0.48 | -- | -- | -- | 0.0783 | 3.02 | -- | -- | -- | -- |
| 35.18 | 0.276 | 9.77 | -0.717 | -- | 0.587 | -- | -- | -0.0886 | -- | 21.8 | 1237 | -- | -- |
| 35.58 | 0.278 | 9.76 | -- | 0.474 | 0.359 | -- | -- | 0.01 | 3.01 | 22.37 | 1586 | -- | -- |
| 46.71 | 0.319 | 9.73 | -0.482 | -- | -- | -- | -- | 0.0908 | -- | -- | -- | -- | -- |
| 40.16 | 0.296 | 9.72 | -- | 0.47 | -- | -- | -- | 0.134 | 3.02 | -- | -- | -- | -- |
| 46.12 | 0.316 | 9.74 | -- | -- | 0.387 | -- | -- | 0.0261 | -- | 22.4 | 1164 | -- | -- |
| 52.84 | 0.339 | 9.72 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.24 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 2 | 24.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 7 | 24.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 29 | 24.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 36 | 24.61 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 110 | 24.85 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 137 | 24.93 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 158 | 24.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 233 | 25.05 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 262 | 25.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 292 | 25.12 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 299 | 25.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 313 | 25.14 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 372 | 25.20 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 378 | 25.21 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 397 | 25.23 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 399 | 25.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 412 | 25.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 414 | 25.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 428 | 25.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 438 | 25.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 441 | 25.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 468 | 25.28 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 469 | 25.28 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 478 | 25.29 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 489 | 25.30 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 497 | 25.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 498 | 25.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 551 | 25.35 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 654 | 25.44 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 722 | 25.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 763 | 25.53 | wind | 9 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 818 | 25.56 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |