BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0151200 Os06g0151200|AK068636
(300 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13700.1 | chr3:4491008-4492632 REVERSE LENGTH=297 216 1e-56
AT2G42240.2 | chr2:17596844-17598911 FORWARD LENGTH=303 140 8e-34
AT3G21215.1 | chr3:7442873-7445231 REVERSE LENGTH=340 83 2e-16
>AT3G13700.1 | chr3:4491008-4492632 REVERSE LENGTH=297
Length = 296
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/310 (43%), Positives = 174/310 (56%), Gaps = 48/310 (15%)
Query: 11 PGDPYYVYAPHPYPD---PQR-------QGVLTLFVAGLPDDVKPREIHNLFSSRPGFDH 60
P DP+YVY H +P PQ + TLFV+GLP+DVK REIHNLF R GF+
Sbjct: 6 PYDPFYVYQLHSHPHHLPPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGFES 65
Query: 61 CLLEYTGRGNQV------------------VAFVSFVNHQAALSAMSALNGTVFDPDTGD 102
C L+YTGRG+QV VAF +F +H+ AL+AM+ LNG FDP TG
Sbjct: 66 CQLKYTGRGDQVCKNLQFLFFFIPIFRKAVVAFATFTSHRFALAAMNELNGVKFDPQTGS 125
Query: 103 RLHIELAKSSSRKRHGDG-GVYRVVDKRLKRKERXXXXXXXXXXXXXXXXXXXXXXXXXX 161
LHIELA+S+SR++ G G Y V+D R K +
Sbjct: 126 NLHIELARSNSRRKERPGSGPYVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGN----- 180
Query: 162 XXXXSDEPLDTENDDSDEKNELPAERSSGQPGLKQHRGQSLSDDQPDKLSSDIPPCSTLF 221
SD P END + K+E +E S P H ++ + S CSTLF
Sbjct: 181 ----SDSP--KENDTT--KSEADSEPDSKAPSANGHL------EKASEGGSGARACSTLF 226
Query: 222 VANLGHSCTEEELKEVLSKQPGFHLLKMRRRGGMPVAFADFTDIESSTAAMDALQGTVLA 281
+ANLG +CTE+ELK++LS+ PGFH+LK+R RGGMPVAFADF +IE +T AM+ LQG +L+
Sbjct: 227 IANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLS 286
Query: 282 SSDADGLQIE 291
SSD G+ IE
Sbjct: 287 SSDRGGMHIE 296
>AT2G42240.2 | chr2:17596844-17598911 FORWARD LENGTH=303
Length = 302
Score = 140 bits (353), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 138/280 (49%), Gaps = 38/280 (13%)
Query: 17 VYAPHPYPDPQRQGVLTLFVAGLPDDVKPREIHNLFSSRPGFDHCLLEYTGRGNQVVAFV 76
VY P R V TLFVAGLP+DVKPREI+NLF PG++ L + G + AF
Sbjct: 35 VYLPTHVSIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR-SSDGAKPFAFA 93
Query: 77 SFVNHQAALSAMSALNGTVFDPDTGDRLHIELAKS---SSRKRHGDGGVYRVVDKRLKRK 133
F + Q+A++ M ALNG VFD + LHI+LAKS S R R DG + LK+
Sbjct: 94 VFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGW------ESLKKL 147
Query: 134 ERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDEPLDTENDDSDEKNELPAERSSGQPG 193
+ T S N + + Q G
Sbjct: 148 KSWNTTTESGFGS-----------------------FQTPGMSSSAYNTIGYSPAQSQ-G 183
Query: 194 LKQHRGQSLSDDQPDKLSSDIPPCSTLFVANLGHSCTEEELKEVLSKQPGFHLLKMRRRG 253
+ G++ + +P K + PC TLF+AN+G +CTE EL +V S+ GF LK++
Sbjct: 184 IANVAGRAPTSRKPSKAAD---PCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTY 240
Query: 254 GMPVAFADFTDIESSTAAMDALQGTVLASS-DADGLQIEY 292
G PVAF DF D+ S+ A+ LQGTVL SS + L+++Y
Sbjct: 241 GTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLRLQY 280
>AT3G21215.1 | chr3:7442873-7445231 REVERSE LENGTH=340
Length = 339
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 56/83 (67%)
Query: 213 DIPPCSTLFVANLGHSCTEEELKEVLSKQPGFHLLKMRRRGGMPVAFADFTDIESSTAAM 272
D PPC+TLF+ NLG + EEEL+ +LS QPGF +K+ R+ V F +F D+ S+T
Sbjct: 228 DNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVH 287
Query: 273 DALQGTVLASSDADGLQIEYARS 295
LQG V+ SS + G++I+Y+++
Sbjct: 288 HNLQGAVIPSSGSIGMRIQYSKN 310
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 33 TLFVAGLPDDVKPREIHNLFSSRPGFDHCLLEYTGRGNQVVAFVSFVNHQAALSAMSALN 92
T+F+AGLPDDVK RE+ NL PG++ + + +G + + F F Q A++A L
Sbjct: 60 TIFIAGLPDDVKERELLNLLRWLPGYEASQVNF--KGEKPMGFALFSTAQFAMAAKDTLQ 117
Query: 93 GTVFDPDTGDRLHIELAKSSSRKRHGDGGVYRVVD--KRLK 131
VFD ++ +H E+AK + + G G D KRL+
Sbjct: 118 HMVFDAESKSVIHTEMAKKNLFVKRGIVGDSNAYDQSKRLR 158
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,687,167
Number of extensions: 286678
Number of successful extensions: 1210
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1214
Number of HSP's successfully gapped: 6
Length of query: 300
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,419,801
Effective search space: 1700799802
Effective search space used: 1700799802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)