Os06g0145100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectate lyase homolog (EC 4.2.2.2).
FiT-DB / Search/ Help/ Sample detail
|
Os06g0145100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Pectate lyase homolog (EC 4.2.2.2).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 711.56 | 1.25 | 3.99 | 1.34 | 0.827 | 3.19 | 2.34 | 12.8 | -0.653 | 14.5 | 5.472 | 5319 | 8.53 | -- |
| 815.52 | 1.33 | 3.56 | 1.45 | 0.599 | 2.45 | 2.06 | -- | -0.0374 | 14.4 | 5.898 | 10206 | 8.89 | -- |
| 729.23 | 1.26 | 3.99 | 1.42 | 0.833 | 3.14 | -- | 11.8 | -0.653 | 14.8 | 5.456 | 5365 | 8.73 | -- |
| 818.71 | 1.33 | 3.55 | 1.68 | 0.621 | 2.65 | -- | -- | 0.0224 | 14.8 | 5.9 | 10212 | 9.24 | -- |
| 748.59 | 1.27 | 3.92 | 1.22 | -- | 3.57 | -- | 15.3 | -0.382 | -- | 5.682 | 4502 | 7.57 | -- |
| 900.23 | 1.41 | 3.65 | 0.567 | 0.641 | -- | 1.64 | -- | -0.286 | 15 | -- | -- | -- | -- |
| 909.04 | 1.41 | 3.64 | 0.603 | 0.655 | -- | -- | -- | -0.276 | 15.3 | -- | -- | -- | -- |
| 839.94 | 1.35 | 3.55 | 1.73 | -- | 2.74 | -- | -- | 0.0351 | -- | 5.895 | 10217 | 9.2 | -- |
| 877.73 | 1.38 | 3.64 | -- | 0.606 | 1.48 | -- | -- | -0.274 | 15.1 | 5.498 | 10192 | 9.42 | -- |
| 933.22 | 1.43 | 3.64 | 0.575 | -- | -- | -- | -- | -0.293 | -- | -- | -- | -- | -- |
| 918.61 | 1.42 | 3.66 | -- | 0.643 | -- | -- | -- | -0.343 | 15.3 | -- | -- | -- | -- |
| 897.97 | 1.4 | 3.61 | -- | -- | 1.56 | -- | -- | -0.229 | -- | 5.899 | 10247 | 9.27 | -- |
| 941.94 | 1.43 | 3.66 | -- | -- | -- | -- | -- | -0.357 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 710.76 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 2 | 710.84 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 4 |
| 6 | 716.12 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 12 | 719.98 | humidity | 90 | 1440 | < th | dose dependent | rect. | 24 | 7 |
| 14 | 720.32 | wind | 5 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 15 | 722.00 | humidity | 80 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 18 | 722.52 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 22 | 723.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 23 | 723.79 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 24 | 723.86 | humidity | 90 | 1440 | < th | dose dependent | rect. | 24 | 4 |
| 35 | 728.45 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 49 | 730.87 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 9 |
| 55 | 731.73 | humidity | 90 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 61 | 732.49 | humidity | 80 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 71 | 733.08 | wind | 9 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 118 | 735.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 122 | 736.02 | wind | 9 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 191 | 741.73 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 196 | 742.11 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 202 | 742.15 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 235 | 742.66 | humidity | 80 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 254 | 743.50 | humidity | 70 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 256 | 743.58 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 11 | 10 |
| 278 | 743.92 | wind | 5 | 4320 | > th | dose independent | rect. | 15 | 19 |
| 349 | 744.56 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 404 | 745.40 | humidity | 70 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 481 | 746.93 | atmosphere | 995 | 14400 | > th | dose independent | sin | 22 | NA |
| 498 | 747.39 | atmosphere | 995 | 14400 | < th | dose independent | sin | 22 | NA |
| 545 | 747.90 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 3 |
| 586 | 748.57 | wind | 5 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 627 | 749.05 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 650 | 749.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 664 | 749.60 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 22 | NA |
| 697 | 749.97 | humidity | 80 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 746 | 750.44 | wind | 5 | 4320 | < th | dose independent | rect. | 15 | 19 |
| 757 | 750.57 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 808 | 750.94 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 20 | 21 |
| 899 | 751.64 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 903 | 751.65 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 904 | 751.66 | atmosphere | 995 | 14400 | > th | dose independent | no | NA | NA |
| 946 | 751.99 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 14 | 21 |
| 958 | 752.09 | humidity | 80 | 270 | < th | dose independent | rect. | 21 | 10 |
| 960 | 752.16 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 995 | 752.56 | wind | 5 | 1440 | > th | dose independent | rect. | 7 | 16 |