FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0144900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pectate lyase homolog (EC 4.2.2.2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.62 (0.0375) R2 : 0.324
β1 : -0.843 (0.137) R2dD : 0.0578 R2D : 0.0399
β2 : -- (--) R2dC : -- R2C : --
β3 : 8.92 (0.663) R2dE : 0.269 R2E : 0.263
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.194 (0.0801) R2dN8 : 0.0116 R2N8 : 0.00372
σ : 0.702
deviance : 227.16
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 32.42
memory length : 163
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.95
open length of G : 1.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
237.04 0.723 3.71 -1.58 0.336 17.1 -0.619 -111 -0.187 14.7 30.74 76 10.2 1.05
285.53 0.787 3.52 -0.662 0.233 13.9 1.58 -- 0.0999 0.544 32.3 83 10.1 0.834
212.54 0.679 3.64 -1.06 0.307 18.6 -- -102 -0.169 14.6 32.7 66 10.5 0.58
229.68 0.706 3.62 -0.753 0.0942 9.72 -- -- -0.0554 9.4 32.47 166 9.96 1.06
218.56 0.689 3.64 -1.03 -- 18.6 -- -92.8 -0.201 -- 32.7 66 10.5 0.551
306.86 0.821 3.62 -0.774 0.404 -- -0.485 -- -0.213 14.3 -- -- -- --
307.72 0.821 3.62 -0.788 0.402 -- -- -- -0.216 14.2 -- -- -- --
227.16 0.702 3.62 -0.843 -- 8.92 -- -- -0.194 -- 32.42 163 9.95 1.02
242.49 0.725 3.59 -- 0.216 9.62 -- -- -0.119 12.3 32.33 155 10.1 0.856
317.37 0.832 3.63 -0.805 -- -- -- -- -0.226 -- -- -- -- --
324.08 0.842 3.6 -- 0.417 -- -- -- -0.129 14.2 -- -- -- --
245.69 0.73 3.6 -- -- 8.87 -- -- -0.1 -- 32.3 161 10.1 0.834
334.45 0.854 3.61 -- -- -- -- -- -0.137 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.72 temperature 30.0 90 > th dose dependent rect. 10 1
2 246.49 temperature 30.0 90 > th dose independent rect. 10 1
3 268.95 radiation 40.0 90 > th dose dependent rect. 10 1
5 273.66 radiation 40.0 90 > th dose independent rect. 10 1
8 275.60 temperature 30.0 10 > th dose dependent rect. 12 1
79 281.10 temperature 15.0 10 > th dose dependent rect. 13 21
80 281.16 wind 5.0 4320 > th dose dependent rect. 21 1
88 282.57 wind 5.0 4320 > th dose dependent rect. 19 8
89 282.59 radiation 40.0 90 > th dose dependent rect. 14 21
119 283.49 wind 5.0 4320 > th dose independent rect. 21 1
120 283.50 precipitation 0.1 14400 > th dose dependent rect. 20 6
123 283.60 wind 7.0 4320 < th dose independent rect. 19 8
130 283.87 precipitation 0.1 14400 < th dose independent rect. 20 1
131 283.87 precipitation 0.1 14400 < th dose dependent rect. 20 1
133 283.93 wind 7.0 4320 > th dose independent rect. 19 8
135 283.94 precipitation 0.1 14400 > th dose dependent rect. 21 1
143 284.10 precipitation 0.1 14400 > th dose independent rect. 20 1
146 284.21 wind 5.0 4320 < th dose independent rect. 20 2
168 284.58 atmosphere 1005.0 10 > th dose independent rect. 10 18
173 284.65 humidity 50.0 14400 < th dose dependent rect. 17 16
204 285.02 humidity 50.0 14400 < th dose dependent rect. 17 1
220 285.04 atmosphere 1005.0 90 > th dose independent rect. 9 18
223 285.06 humidity 50.0 14400 < th dose independent rect. 17 16
273 285.50 wind 9.0 4320 > th dose dependent rect. 20 15
279 285.60 temperature 20.0 4320 < th dose independent rect. 21 1
285 285.68 temperature 20.0 4320 > th dose independent rect. 21 1
300 285.80 temperature 20.0 30 > th dose independent rect. 13 21
305 285.85 humidity 50.0 14400 > th dose independent rect. 17 1
317 285.99 humidity 50.0 14400 < th dose independent rect. 17 1
335 286.07 radiation 40.0 90 > th dose dependent sin 9 NA
364 286.16 atmosphere 1005.0 1440 > th dose independent rect. 17 1
376 286.29 atmosphere 995.0 10 > th dose dependent rect. 10 18
393 286.48 atmosphere 1005.0 1440 < th dose independent rect. 17 1
409 286.56 humidity 50.0 14400 > th dose independent rect. 17 14
414 286.59 humidity 50.0 14400 > th dose independent rect. 17 7
422 286.64 humidity 50.0 14400 > th dose independent rect. 17 12
423 286.65 humidity 50.0 14400 < th dose independent rect. 16 19
439 286.87 humidity 50.0 14400 > th dose independent rect. 16 18
484 287.10 atmosphere 1005.0 90 > th dose independent rect. 9 14
528 287.36 wind 9.0 4320 > th dose independent rect. 20 14
529 287.36 atmosphere 995.0 43200 < th dose dependent rect. 14 1
540 287.44 temperature 25.0 1440 < th dose independent rect. 4 4
577 287.53 wind 7.0 14400 > th dose independent rect. 6 3
582 287.55 temperature 25.0 1440 > th dose independent rect. 4 4
589 287.59 radiation 20.0 4320 < th dose independent rect. 16 1
614 287.84 wind 9.0 43200 > th dose dependent rect. 18 13
625 287.93 temperature 25.0 1440 < th dose independent rect. 21 12
628 287.94 atmosphere 1005.0 10 > th dose independent rect. 7 21
641 288.01 atmosphere 1005.0 10 > th dose independent rect. 10 14
648 288.03 temperature 20.0 90 > th dose independent rect. 23 22
660 288.09 wind 9.0 4320 < th dose independent rect. 20 15
664 288.10 temperature 10.0 720 > th dose dependent rect. 12 13
666 288.11 wind 5.0 4320 > th dose dependent rect. 19 15
674 288.14 temperature 15.0 10 > th dose dependent rect. 23 11
687 288.21 temperature 25.0 1440 > th dose independent rect. 20 13
689 288.22 atmosphere 995.0 43200 < th dose dependent rect. 12 4
763 288.46 wind 7.0 14400 < th dose independent rect. 6 3
770 288.48 atmosphere 1015.0 30 < th dose dependent rect. 13 21
834 288.63 temperature 15.0 1440 > th dose dependent rect. 24 9
844 288.65 temperature 30.0 1440 < th dose dependent rect. 23 10
914 288.82 wind 5.0 43200 < th dose independent rect. 19 2
934 288.85 atmosphere 1005.0 90 > th dose dependent rect. 9 14
939 288.87 radiation 1.0 43200 < th dose dependent rect. 1 1
950 288.89 atmosphere 1005.0 10 > th dose independent rect. 10 8
954 288.91 wind 5.0 43200 > th dose independent rect. 19 2
964 288.93 atmosphere 995.0 43200 > th dose independent rect. 12 2
966 288.93 radiation 40.0 90 < th dose independent rect. 23 22
967 288.93 temperature 10.0 1440 > th dose dependent rect. 5 4
985 288.96 temperature 10.0 1440 > th dose dependent rect. 18 15
990 288.98 atmosphere 995.0 43200 < th dose independent rect. 7 8
993 288.99 temperature 30.0 1440 < th dose dependent rect. 8 1
996 289.00 wind 7.0 43200 > th dose independent rect. 6 1