FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0142300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Early nodulin 93 ENOD93 protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.11 (0.0773) R2 : 0.374
β1 : 0.142 (0.284) R2dD : 0.000282 R2D : -0.0124
β2 : 1.01 (0.223) R2dC : 0.0358 R2C : -0.0863
β3 : 2.38 (0.174) R2dE : 0.339 R2E : 0.218
β4 : 5.31 (0.85) R2dD*C : 0.0542 R2D*C : 0.0279
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.983 (0.165) R2dN8 : 0.0674 R2N8 : 0.065
σ : 1.44
deviance : 960.71
__
_____
C
peak time of C : 15.9
E
wheather : temperature
threshold : 20.03
memory length : 126
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.9
open length of G : 10.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
950.78 1.45 5.14 -0.0441 0.963 2.23 4.66 -2.01 0.945 16.7 20.09 120 18 10.7
960.71 1.44 5.11 0.142 1.01 2.38 5.31 -- 0.983 15.9 20.03 126 17.9 10.6
1003.76 1.48 5.14 -0.03 0.996 2.23 -- -2.63 0.978 17.1 20.1 120 18 10.4
1037.41 1.5 5.13 0.258 0.918 2.2 -- -- 0.966 17.2 20.07 121 18 10.4
1025.58 1.49 5.15 0.0521 -- 2 -- -2.24 0.905 -- 20.03 88 17.8 10.2
1164.7 1.6 5.1 0.456 2 -- -1.66 -- 1.17 22.7 -- -- -- --
1174.53 1.6 5.1 0.53 2.02 -- -- -- 1.18 22.4 -- -- -- --
1052.83 1.51 5.09 0.298 -- 2.07 -- -- 0.996 -- 20 102 17.7 10.1
1038.11 1.5 5.12 -- 0.907 2.17 -- -- 0.963 17.2 20 123 18 10.4
1424.96 1.76 5.05 0.563 -- -- -- -- 1.18 -- -- -- -- --
1181.93 1.61 5.11 -- 2.03 -- -- -- 1.12 22.4 -- -- -- --
1054.75 1.51 5.1 -- -- 2.08 -- -- 0.969 -- 20.1 105 17.6 10.1
1433.31 1.77 5.06 -- -- -- -- -- 1.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 954.78 temperature 20.0 90 > th dose independent rect. 18 11
3 960.45 humidity 60.0 30 > th dose dependent rect. 18 2
7 964.54 humidity 70.0 90 > th dose independent rect. 18 2
9 969.03 temperature 30.0 90 < th dose independent rect. 18 2
14 973.70 humidity 70.0 10 > th dose independent rect. 18 2
27 979.98 radiation 10.0 43200 < th dose dependent rect. 20 1
28 981.96 temperature 15.0 1440 > th dose independent rect. 20 1
38 986.43 temperature 20.0 270 > th dose independent rect. 16 12
46 987.10 temperature 20.0 90 > th dose independent rect. 19 1
47 987.11 humidity 70.0 4320 > th dose independent rect. 20 1
51 987.27 temperature 30.0 1440 < th dose independent rect. 20 1
55 987.27 humidity 50.0 1440 > th dose independent rect. 20 1
61 987.27 atmosphere 995.0 1440 > th dose independent rect. 20 1
65 987.27 radiation 1.0 1440 < th dose independent rect. 20 1
85 987.27 temperature 10.0 1440 > th dose independent rect. 21 23
88 987.27 radiation 1.0 1440 < th dose dependent rect. 20 1
110 989.87 wind 9.0 90 < th dose dependent rect. 19 1
119 992.80 temperature 15.0 90 > th dose dependent rect. 18 11
120 992.93 wind 5.0 90 < th dose independent rect. 19 1
121 993.32 radiation 1.0 90 < th dose dependent rect. 18 2
128 996.10 temperature 15.0 90 > th dose independent rect. 20 23
129 996.16 radiation 1.0 90 < th dose independent rect. 18 2
132 997.22 temperature 10.0 90 > th dose independent rect. 19 1
137 997.22 atmosphere 995.0 90 > th dose independent rect. 19 1
138 997.22 atmosphere 1010.0 90 < th dose independent rect. 19 1
151 997.23 wind 1.0 90 > th dose independent rect. 19 1
152 997.23 wind 9.0 90 < th dose independent rect. 20 23
154 997.32 wind 9.0 90 < th dose independent rect. 19 1
169 1001.06 humidity 60.0 720 > th dose independent rect. 17 3
177 1002.02 radiation 10.0 720 < th dose independent rect. 16 4
202 1004.24 radiation 10.0 720 < th dose independent rect. 16 11
308 1007.10 temperature 20.0 720 > th dose independent rect. 17 3
314 1007.69 radiation 10.0 720 < th dose independent rect. 14 5
352 1009.13 radiation 1.0 90 < th dose dependent rect. 6 14
368 1010.38 precipitation 0.1 90 < th dose independent rect. 20 23
369 1010.38 precipitation 0.1 90 < th dose dependent rect. 20 23
376 1011.08 radiation 10.0 90 < th dose dependent rect. 18 14
382 1011.67 precipitation 0.1 90 < th dose independent rect. 19 1
383 1011.67 precipitation 0.1 90 < th dose dependent rect. 19 1
384 1011.73 radiation 10.0 720 < th dose dependent rect. 17 3
395 1012.59 radiation 1.0 90 < th dose dependent rect. 11 9
396 1012.60 radiation 1.0 90 < th dose dependent rect. 13 7
398 1012.62 temperature 30.0 10 < th dose dependent rect. 18 2
477 1014.66 radiation 10.0 90 < th dose dependent rect. 18 19
482 1014.97 temperature 10.0 90 > th dose dependent rect. 19 1
488 1015.48 temperature 20.0 90 > th dose independent sin 13 NA
490 1015.90 atmosphere 995.0 90 > th dose dependent rect. 19 1
495 1016.29 radiation 1.0 90 < th dose independent rect. 18 16
503 1016.55 temperature 20.0 90 > th dose independent rect. 18 5
504 1016.58 radiation 1.0 90 < th dose independent rect. 18 19
539 1017.09 atmosphere 1015.0 90 < th dose dependent rect. 19 1
548 1017.90 wind 7.0 720 < th dose independent rect. 20 5
591 1020.91 humidity 50.0 720 > th dose dependent rect. 18 2
601 1021.60 wind 9.0 720 < th dose independent rect. 13 19
651 1022.71 radiation 40.0 270 < th dose dependent rect. 20 13
678 1023.18 radiation 10.0 720 < th dose dependent rect. 17 10
724 1025.90 wind 7.0 270 < th dose independent rect. 20 11
736 1026.35 radiation 1.0 90 < th dose dependent sin 22 NA
750 1026.98 humidity 60.0 1440 > th dose independent rect. 19 5
756 1027.47 humidity 60.0 720 > th dose independent rect. 17 11
795 1029.31 humidity 60.0 720 > th dose independent rect. 16 13
799 1029.38 temperature 20.0 270 > th dose independent rect. 7 13
802 1029.44 temperature 10.0 270 > th dose dependent sin 11 NA
811 1030.07 wind 9.0 720 < th dose independent rect. 20 21
834 1030.83 radiation 1.0 90 < th dose independent rect. 7 13
842 1031.06 wind 9.0 30 < th dose dependent rect. 21 22
846 1031.26 wind 1.0 90 > th dose independent rect. 18 5
850 1031.36 temperature 30.0 90 < th dose independent rect. 18 12
852 1031.39 wind 5.0 720 < th dose independent rect. 5 3
857 1031.74 radiation 20.0 270 < th dose independent rect. 20 12
862 1031.94 radiation 10.0 43200 < th dose dependent rect. 19 5
889 1032.20 precipitation 0.1 720 < th dose independent rect. 8 5
890 1032.20 precipitation 0.1 720 < th dose dependent rect. 8 5
893 1032.35 temperature 30.0 270 < th dose dependent rect. 20 13
898 1032.54 temperature 10.0 270 > th dose independent rect. 20 11
899 1032.54 temperature 30.0 270 < th dose independent rect. 20 11
900 1032.54 humidity 50.0 270 > th dose independent rect. 20 11
902 1032.54 atmosphere 995.0 270 > th dose independent rect. 20 11
903 1032.54 radiation 40.0 270 < th dose independent rect. 20 11
904 1032.54 temperature 10.0 270 > th dose independent rect. 7 13
905 1032.54 atmosphere 1015.0 270 < th dose independent rect. 7 13
909 1032.67 humidity 50.0 720 > th dose independent rect. 8 5
917 1032.96 temperature 10.0 720 > th dose independent rect. 8 5
918 1032.96 atmosphere 995.0 720 > th dose independent rect. 8 5
919 1032.96 atmosphere 1015.0 720 < th dose independent rect. 8 5
920 1032.96 temperature 10.0 720 > th dose independent rect. 13 19
927 1033.24 temperature 15.0 1440 > th dose independent rect. 19 5
947 1033.71 radiation 1.0 90 < th dose independent rect. 13 7
966 1034.09 humidity 60.0 90 > th dose independent rect. 18 12
973 1034.32 wind 9.0 270 < th dose dependent rect. 16 4
979 1034.42 temperature 30.0 720 < th dose independent rect. 20 5
983 1034.42 atmosphere 995.0 720 > th dose independent rect. 20 5
984 1034.42 radiation 1.0 720 < th dose independent rect. 20 5
989 1034.42 temperature 10.0 720 > th dose independent rect. 1 19
990 1034.42 radiation 10.0 720 < th dose dependent rect. 20 5
998 1034.51 wind 1.0 270 > th dose independent rect. 8 12