Os06g0140100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine carboxyl methyltransferase family protein.
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Os06g0140100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine carboxyl methyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.59 | 0.256 | 11.1 | -0.729 | 0.31 | 0.231 | -0.189 | -0.681 | 0.0325 | 23 | 20.5 | 1185 | -- | -- |
| 30.49 | 0.257 | 11.1 | -0.623 | 0.307 | 0.353 | -0.27 | -- | 0.0599 | 23 | 20.03 | 1192 | -- | -- |
| 29.7 | 0.254 | 11.1 | -0.723 | 0.306 | 0.224 | -- | -0.703 | 0.0354 | 22.9 | 20.55 | 1091 | -- | -- |
| 30.84 | 0.259 | 11.1 | -0.605 | 0.305 | 0.346 | -- | -- | 0.0605 | 22.9 | 20 | 1163 | -- | -- |
| 35.25 | 0.277 | 11.1 | -0.749 | -- | 0.306 | -- | -0.685 | 0.0112 | -- | 20.5 | 1065 | -- | -- |
| 33.05 | 0.27 | 11.1 | -0.477 | 0.33 | -- | -0.315 | -- | 0.131 | 23.3 | -- | -- | -- | -- |
| 33.46 | 0.271 | 11.1 | -0.463 | 0.332 | -- | -- | -- | 0.132 | 23.1 | -- | -- | -- | -- |
| 36.01 | 0.279 | 11.1 | -0.624 | -- | 0.43 | -- | -- | 0.0486 | -- | 19.8 | 982 | -- | -- |
| 38.77 | 0.292 | 11.1 | -- | 0.347 | 0.0878 | -- | -- | 0.169 | 23.1 | 20.6 | 1075 | -- | -- |
| 40.33 | 0.297 | 11.1 | -0.456 | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
| 39.12 | 0.293 | 11.1 | -- | 0.328 | -- | -- | -- | 0.184 | 23 | -- | -- | -- | -- |
| 44.68 | 0.311 | 11.1 | -- | -- | 0.196 | -- | -- | 0.158 | -- | 20.1 | 927 | -- | -- |
| 45.81 | 0.316 | 11.1 | -- | -- | -- | -- | -- | 0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 5 | 27.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 9 |
| 6 | 27.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 9 | 27.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 44 | 27.54 | humidity | 90 | 14400 | > th | dose dependent | sin | 8 | NA |
| 58 | 27.60 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 142 | 28.00 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 173 | 28.11 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 234 | 28.31 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 244 | 28.33 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 293 | 28.44 | humidity | 90 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 296 | 28.45 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 303 | 28.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 312 | 28.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 324 | 28.51 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 4 |
| 333 | 28.52 | humidity | 90 | 14400 | > th | dose independent | sin | 9 | NA |
| 341 | 28.53 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 342 | 28.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 351 | 28.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 368 | 28.58 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 3 |
| 372 | 28.59 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 373 | 28.59 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 394 | 28.62 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 423 | 28.66 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 454 | 28.70 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 458 | 28.71 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 466 | 28.72 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 481 | 28.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 519 | 28.79 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 7 |
| 531 | 28.81 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 540 | 28.82 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 545 | 28.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 546 | 28.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 557 | 28.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 572 | 28.86 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 585 | 28.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 602 | 28.88 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 603 | 28.88 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 637 | 28.90 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 651 | 28.91 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 686 | 28.94 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 1 | 10 |
| 695 | 28.95 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 699 | 28.96 | radiation | 1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 702 | 28.96 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 729 | 28.98 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 742 | 28.99 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 745 | 28.99 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 752 | 28.99 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 755 | 28.99 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 762 | 29.00 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 763 | 29.00 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 783 | 29.01 | humidity | 90 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 806 | 29.02 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 820 | 29.03 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 837 | 29.04 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 838 | 29.04 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 853 | 29.05 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 872 | 29.06 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 900 | 29.06 | radiation | 30 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 904 | 29.07 | radiation | 40 | 10 | > th | dose independent | rect. | 11 | 1 |
| 919 | 29.08 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 944 | 29.08 | radiation | 40 | 10 | < th | dose independent | rect. | 1 | 22 |
| 945 | 29.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 14 |
| 947 | 29.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 976 | 29.09 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 19 | 15 |
| 983 | 29.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 989 | 29.10 | wind | 9 | 4320 | > th | dose independent | rect. | 16 | 10 |